Mercurial > repos > iuc > bedtools

comparison bamToFastq.xml @ 48:2f457890d8c8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit fc3616bd1463afef9681cd7c431ac29f79e37e74
author iuc
date Tue, 11 Dec 2018 13:59:34 -0500
parents cb98f29aa1dc
children df28283b3778
comparison
equal deleted inserted replaced
47:33c2e424ad7d 48:2f457890d8c8
1 <tool id="bedtools_bamtofastq" name="Convert from BAM to FastQ" version="@WRAPPER_VERSION@.0"> 1 <tool id="bedtools_bamtofastq" name="bedtools Convert from BAM to FastQ" version="@WRAPPER_VERSION@">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
24 <data format="fastq" name="output" metadata_source="input" label="${input.name} (as FASTQ)"/> 24 <data format="fastq" name="output" metadata_source="input" label="${input.name} (as FASTQ)"/>
25 <data format="fastq" name="output2" metadata_source="input" label="${input.name} (as FASTQ)"> 25 <data format="fastq" name="output2" metadata_source="input" label="${input.name} (as FASTQ)">
26 <filter>fq2 is True</filter> 26 <filter>fq2 is True</filter>
27 </data> 27 </data>
28 </outputs> 28 </outputs>
29 <tests>
30 <test>
31 <param name="input" value="srma_in3.bam" ftype="bam" />
32 <output name="output" file="bamToFastq_result1.fastq" ftype="fastq" />
33 </test>
34 </tests>
29 <help> 35 <help>
30 36
31 **What it does** 37 **What it does**
32 38
33 bedtools bamtofastq is a conversion utility for extracting FASTQ records from sequence alignments in BAM format. 39 bedtools bamtofastq is a conversion utility for extracting FASTQ records from sequence alignments in BAM format.