Mercurial > repos > iuc > bedtools

comparison tool_dependencies.xml @ 3:190a747ddaa8 draft

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author bgruening
date Sat, 03 Jan 2015 16:23:23 -0500
parents effb7b4e45ed
children 315929597efb
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2:effb7b4e45ed 3:190a747ddaa8
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="weka" version="3.6.11"> 3 <package name="bedtools" version="2.22">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://sourceforge.net/projects/weka/files/weka-3-6/3.6.11/weka-3-6-11.zip</action> 6 <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.22.1/bedtools-2.22.1.tar.gz</action>
7 <action type="move_file"> 7 <action type="shell_command">make</action>
8 <source>weka-3-6-11/weka.jar</source> 8 <action type="move_directory_files">
9 <destination>$INSTALL_DIR</destination> 9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
10 </action> 11 </action>
11 <action type="set_environment"> 12 <action type="set_environment">
12 <environment_variable name="WEKA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
13 </action> 14 </action>
14 </actions> 15 </actions>
15 </install> 16 </install>
16 <readme> 17 <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
17 Weka requires a JAVA (1.5+) runtime evironment.
18 </readme>
19 </package> 18 </package>
20 </tool_dependency> 19 </tool_dependency>
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