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1 <tool id="bedtools_bed12tobed6" name="Convert from BED12 to BED6" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command>
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9 bed12ToBed16
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10 -i '$input'
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11 > '$output'
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12 </command>
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13 <inputs>
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14 <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/>
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15 </inputs>
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16 <outputs>
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17 <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/>
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18 </outputs>
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19 <help>
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20
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21 **What it does**
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22
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23 bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
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24
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25 @REFERENCES@
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26 </help>
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27 <expand macro="citations" />
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28 </tool>
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