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comparison beagle.xml @ 3:d93346789db9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit 56eb8eaa7ffcdd9a4de1b9c7fb6459a049c7a416
author iuc
date Fri, 16 May 2025 18:50:59 +0000
parents ab97b3b44590
children
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2:ab97b3b44590 3:d93346789db9
62 && gunzip 'out.vcf.gz' 62 && gunzip 'out.vcf.gz'
63 && mv out.vcf '$vcf_file' 63 && mv out.vcf '$vcf_file'
64 #end if 64 #end if
65 ]]> </command> 65 ]]> </command>
66 <inputs> 66 <inputs>
67 <param argument="gt" type="data" format="vcf" label="VCF file" 67 <param argument="gt" type="data" format="vcf,vcf_bgzip" label="VCF file"
68 help="It specifies a VCF file containing genotypes for the study samples. 68 help="It specifies a VCF file containing genotypes for the study samples.
69 Each VCF record must contain a GT (genotype) format field"/> 69 Each VCF record must contain a GT (genotype) format field"/>
70 <section name="optional_inputs" title="Optional input files" expanded="true"> 70 <section name="optional_inputs" title="Optional input files" expanded="true">
71 <param argument="ref" type="data" format="vcf,bref3" optional="true" label="Bref3 or VCF file with phased genotypes" 71 <param argument="ref" type="data" format="vcf,bref3" optional="true" label="Bref3 or VCF file with phased genotypes"
72 help="Each genotype must have two phased, non-missing alleles. If a VCF file is specified, the 72 help="Each genotype must have two phased, non-missing alleles. If a VCF file is specified, the