Mercurial > repos > iuc > beagle

comparison test-data/test_output.log @ 0:117d42db0a30 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit ccb3f8eaa99490f8513200e45fc59e5011fb41e8"
author iuc
date Sat, 03 Jul 2021 23:33:08 +0000
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children ab97b3b44590
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-1:000000000000 0:117d42db0a30
1 beagle.21Apr21.304.jar (version 5.2)
2 Copyright (C) 2014-2021 Brian L. Browning
3 Enter "java -jar beagle.21Apr21.304.jar" to list command line argument
4 Start time: 08:46 PM GMT on 26 Jun 2021
5
6 Command line: java -Xmx989m -jar beagle.21Apr21.304.jar
7 gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat
8 chrom=22:100-
9 ne=1000000
10 window=40.0
11 overlap=2.0
12 seed=1
13 err=0.02
14 burnin=3
15 iterations=12
16 phase-states=280
17 impute=true
18 imp-states=1600
19 imp-segment=6.0
20 imp-step=0.1
21 cluster=0.005
22 ap=false
23 gp=false
24 out=out
25 nthreads=1
26
27 No genetic map is specified: using 1 cM = 1 Mb
28
29 Reference samples: 0
30 Study samples: 191
31
32 Window 1 [22:20000086-20016908]
33 Reference markers: 223
34 Study markers: 223
35
36 Burnin iteration 1: 1 second
37
38 Burnin iteration 2: 0 seconds
39
40 Burnin iteration 3: 0 seconds
41
42 Phasing iteration 1: 0 seconds
43
44 Phasing iteration 2: 0 seconds
45
46 Phasing iteration 3: 0 seconds
47
48 Phasing iteration 4: 0 seconds
49
50 Phasing iteration 5: 0 seconds
51
52 Phasing iteration 6: 0 seconds
53
54 Phasing iteration 7: 0 seconds
55
56 Phasing iteration 8: 0 seconds
57
58 Phasing iteration 9: 0 seconds
59
60 Phasing iteration 10: 0 seconds
61
62 Phasing iteration 11: 0 seconds
63
64 Phasing iteration 12: 0 seconds
65
66 Cumulative Statistics:
67
68 Study markers: 223
69
70 Haplotype phasing time: 2 seconds
71 Total time: 3 seconds
72
73 End time: 08:46 PM GMT on 26 Jun 2021
74 beagle.21Apr21.304.jar finished