Mercurial > repos > iuc > beacon2_gene

comparison gene.xml @ 1:7cde0f1d7d55 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit 23f6d9e5e91c43d5ab68e604205e06785635f42f
author iuc
date Mon, 19 Aug 2024 10:49:39 +0000
parents 9f64a2f52667
children
comparison
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0:9f64a2f52667 1:7cde0f1d7d55
48 <data name="out_gene_query" format="json" label="${tool.name} on ${on_string}: Gene Query" from_work_dir="gene_query_findings.json" /> 48 <data name="out_gene_query" format="json" label="${tool.name} on ${on_string}: Gene Query" from_work_dir="gene_query_findings.json" />
49 </outputs> 49 </outputs>
50 <tests> 50 <tests>
51 <test expect_num_outputs="1"> 51 <test expect_num_outputs="1">
52 <param name="database" value="beacon" /> 52 <param name="database" value="beacon" />
53 <param name="collection" value="genomicVariations" /> 53 <param name="collection" value="test" />
54 <param name="db_host" value="20.108.51.167" /> 54 <param name="db_host" value="20.108.51.167" />
55 <param name="geneId" value="OR4F5-LOC729737" /> 55 <param name="geneId" value="BRCA1" />
56 <param name="alternateBases" value="A" /> 56 <param name="variantType" value="SNV" />
57 <param name="variantType" value="SNP" /> 57 <param name="aminoacidChange" value="p.Val600Glu" />
58 <param name="aminoacidChange" value="." />
59 <output name="out_gene_query"> 58 <output name="out_gene_query">
60 <assert_contents><has_text_matching expression="_id"/></assert_contents> 59 <assert_contents><has_text_matching expression="_id"/></assert_contents>
61 </output> 60 </output>
62 </test> 61 </test>
63 </tests> 62 </tests>