Mercurial > repos > iuc > beacon2_csv2xlsx

comparison test-data/EGAF00005572887.json @ 0:4509627e6ee1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2 commit dcaf8046840f163143075b276dd75909d344ec3a
author iuc
date Sun, 01 Oct 2023 16:29:22 +0000
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-1:000000000000 0:4509627e6ee1
1 {
2 "phenopacket": {
3 "id": "P0008909",
4 "subject": {
5 "id": "P0008909",
6 "dateOfBirth": "1982-01-01T00:00:00Z",
7 "sex": "FEMALE"
8 },
9 "phenotypicFeatures": [
10 {
11 "negated": true,
12 "type": {
13 "id": "HP:0000144",
14 "label": "Decreased fertility"
15 }
16 },
17 {
18 "negated": true,
19 "type": {
20 "id": "HP:0003003",
21 "label": "Colon cancer"
22 }
23 },
24 {
25 "type": {
26 "id": "HP:0003002",
27 "label": "Breast carcinoma"
28 }
29 },
30 {
31 "type": {
32 "id": "HP:0100013",
33 "label": "Neoplasm of the breast"
34 }
35 }
36 ],
37 "diseases": [
38 {
39 "term": {
40 "id": "Orphanet:145",
41 "label": "Hereditary breast and ovarian cancer syndrome"
42 }
43 }
44 ],
45 "genes": [],
46 "variants": [],
47 "meta_data": {
48 "created": "2021-04-21T09:45:31.121Z",
49 "resources": [
50 {
51 "id": "hp",
52 "name": "Human Phenotype Ontology",
53 "url": "http://purl.obolibrary.org/obo/hp.owl",
54 "version": "2020-12-07",
55 "namespacePrefix": "HP",
56 "iriPrefix": "http://purl.obolibrary.org/obo/HP_"
57 },
58 {
59 "id": "orphanet",
60 "name": "Orphanet Rare Disease Ontology",
61 "url": "http://orpha.net/ontology/ORDO_en_3.1.owl",
62 "version": "3.1",
63 "namespacePrefix": "Orphanet",
64 "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_"
65 },
66 {
67 "id": "hgnc",
68 "name": "HUGO Gene Nomenclature Committee",
69 "url": "https://www.genenames.org",
70 "version": "2021-01-13",
71 "namespacePrefix": "HGNC",
72 "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
73 },
74 {
75 "id": "mim",
76 "name": "Online Mendelian Inheritance in Man",
77 "url": "https://omim.org/",
78 "version": "2021-01-21",
79 "namespacePrefix": "OMIM",
80 "iriPrefix": "https://omim.org/entry/"
81 }
82 ]
83 }
84 },
85 "interpretation": {
86 "id": "P0008909",
87 "resolutionStatus": "UNSOLVED",
88 "phenopacket": {
89 "id": "P0008909",
90 "subject": {
91 "id": "P0008909",
92 "dateOfBirth": "1982-01-01T00:00:00Z",
93 "sex": "FEMALE"
94 },
95 "phenotypicFeatures": [
96 {
97 "negated": true,
98 "type": {
99 "id": "HP:0000144",
100 "label": "Decreased fertility"
101 }
102 },
103 {
104 "negated": true,
105 "type": {
106 "id": "HP:0003003",
107 "label": "Colon cancer"
108 }
109 },
110 {
111 "type": {
112 "id": "HP:0003002",
113 "label": "Breast carcinoma"
114 }
115 },
116 {
117 "type": {
118 "id": "HP:0100013",
119 "label": "Neoplasm of the breast"
120 }
121 }
122 ],
123 "diseases": [
124 {
125 "term": {
126 "id": "Orphanet:145",
127 "label": "Hereditary breast and ovarian cancer syndrome"
128 }
129 }
130 ],
131 "genes": [],
132 "variants": [],
133 "meta_data": {
134 "created": "2021-04-21T09:45:31.121Z",
135 "resources": [
136 {
137 "id": "hp",
138 "name": "Human Phenotype Ontology",
139 "url": "http://purl.obolibrary.org/obo/hp.owl",
140 "version": "2020-12-07",
141 "namespacePrefix": "HP",
142 "iriPrefix": "http://purl.obolibrary.org/obo/HP_"
143 },
144 {
145 "id": "orphanet",
146 "name": "Orphanet Rare Disease Ontology",
147 "url": "http://orpha.net/ontology/ORDO_en_3.1.owl",
148 "version": "3.1",
149 "namespacePrefix": "Orphanet",
150 "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_"
151 },
152 {
153 "id": "hgnc",
154 "name": "HUGO Gene Nomenclature Committee",
155 "url": "https://www.genenames.org",
156 "version": "2021-01-13",
157 "namespacePrefix": "HGNC",
158 "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
159 },
160 {
161 "id": "mim",
162 "name": "Online Mendelian Inheritance in Man",
163 "url": "https://omim.org/",
164 "version": "2021-01-21",
165 "namespacePrefix": "OMIM",
166 "iriPrefix": "https://omim.org/entry/"
167 }
168 ]
169 }
170 },
171 "diagnosis": [],
172 "meta_data": {}
173 }
174 }