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comparison remove_tail.xml @ 0:6442d25062bf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author iuc
date Tue, 14 Nov 2017 05:49:32 -0500
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-1:000000000000 0:6442d25062bf
1 <tool id="bctools_remove_tail" name="Remove 3'-end nts" version="@VERSION@">
2 <description>from FASTQ</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[
8 remove_tail.py
9 '$reads_fastq'
10 '$length'
11 > '$default'
12 ]]></command>
13 <inputs>
14 <param name="reads_fastq" type="data" format="fastq" label="FASTQ file"/>
15 <param name="length" type="integer" value="0" label="Remove this many nucleotides"/>
16 </inputs>
17 <outputs>
18 <data name="default" format="fastq"/>
19 </outputs>
20 <tests>
21 <test>
22 <param name="reads_fastq" value="readswithtail.fastq"/>
23 <param name="length" value="7"/>
24 <output name="default" file="readswithtailremoved.fastq"/>
25 </test>
26 </tests>
27 <help><![CDATA[
28
29 bctools - Remove 3'-end nts from FASTQ
30 ======================================
31
32 Remove a certain number of nucleotides from the 3'-tails of sequences in FASTQ format.
33
34 ]]></help>
35 <expand macro="citations"/>
36 </tool>