Mercurial > repos > iuc > bcftools_view

comparison bcftools_view.xml @ 23:733e81d6f715 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 96c0663be587b73bdf09ddf060cb559f28f9eba7
author iuc
date Thu, 12 Jan 2023 15:13:43 +0000
parents a950754650d0
children 9dac1d55dbfe
comparison
equal deleted inserted replaced
22:cd9b420b56fc 23:733e81d6f715
242 <test> 242 <test>
243 <param name="input_file" ftype="vcf" value="view.vcf" /> 243 <param name="input_file" ftype="vcf" value="view.vcf" />
244 <param name="known_or_novel" value="--novel" /> 244 <param name="known_or_novel" value="--novel" />
245 <param name="private" value="--exclude-private" /> 245 <param name="private" value="--exclude-private" />
246 <param name="samples" value="NA00003" /> 246 <param name="samples" value="NA00003" />
247 <conditional name="regions"> 247 <section name="sec_restrict">
248 <param name="regions_src" value="regions"/> 248 <conditional name="regions">
249 <repeat name="regions"> 249 <param name="regions_src" value="regions"/>
250 <param name="chrom" value="Y" /> 250 <repeat name="regions">
251 <param name="start" value="20" /> 251 <param name="chrom" value="Y" />
252 </repeat> 252 <param name="start" value="20" />
253 </conditional> 253 </repeat>
254 </conditional>
255 </section>
254 <param name="output_type" value="v" /> 256 <param name="output_type" value="v" />
255 <output name="output_file"> 257 <output name="output_file">
256 <assert_contents> 258 <assert_contents>
257 <has_text text="8657215" /> 259 <has_text text="8657215" />
258 <not_has_text text="rs6111385" /> 260 <not_has_text text="rs6111385" />
266 <param name="input_file" ftype="vcf" value="view.vcf" /> 268 <param name="input_file" ftype="vcf" value="view.vcf" />
267 <param name="known_or_novel" value="--known" /> 269 <param name="known_or_novel" value="--known" />
268 <param name="private" value="--exclude-private" /> 270 <param name="private" value="--exclude-private" />
269 <param name="apply_filters" value="PASS" /> 271 <param name="apply_filters" value="PASS" />
270 <param name="samples" value="NA00003" /> 272 <param name="samples" value="NA00003" />
271 <param name="regions" value="20,Y" /> 273 <section name="sec_restrict">
272 <param name="output_type" value="v" /> 274 <conditional name="regions">
273 <output name="output_file"> 275 <param name="regions_src" value="regions"/>
274 <assert_contents> 276 <repeat name="regions">
275 <has_text text="rs6111385" /> 277 <param name="chrom" value="Y" />
278 <param name="start" value="20" />
279 </repeat>
280 </conditional>
281 </section>
282 <param name="output_type" value="v" />
283 <output name="output_file">
284 <assert_contents>
285 <has_text text="Minimum number of alternate bases" />
276 <not_has_text text="8657215" /> 286 <not_has_text text="8657215" />
277 </assert_contents> 287 </assert_contents>
278 </output> 288 </output>
279 </test> 289 </test>
280 <test> 290 <test>