Mercurial > repos > iuc > bcftools_stats

comparison bcftools_stats.xml @ 12:7392463f2803 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 8f3fe2272c80fdb749db49be689681e4d1391bee"
author iuc
date Wed, 25 Dec 2019 17:09:59 +0000
parents b8f57e0f05ba
children 2325da2658ba
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11:b8f57e0f05ba 12:7392463f2803
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@" profile="18.01">
3 <description>Parses VCF or BCF and produces stats which can be plotted using plot-vcfstats</description> 3 <description>Parses VCF or BCF and produces stats which can be plotted using plot-vcfstats</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">stats</token> 5 <token name="@EXECUTABLE@">stats</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
193 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/> 193 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/>
194 <has_text_matching expression="SN\t0\tnumber of records:\t4103"/> 194 <has_text_matching expression="SN\t0\tnumber of records:\t4103"/>
195 <has_text_matching expression="ST\t0\tA>C\t16"/> 195 <has_text_matching expression="ST\t0\tA>C\t16"/>
196 </assert_contents> 196 </assert_contents>
197 </output> 197 </output>
198 <output name="output_pdf" file="summary.pdf" compare="sim_size" delta="20000" /> 198 <output name="output_pdf" file="summary.pdf" compare="sim_size" delta="25000" />
199 </test> 199 </test>
200 </tests> 200 </tests>
201 <help><![CDATA[ 201 <help><![CDATA[
202 ===================================== 202 =====================================
203 bcftools @EXECUTABLE@ 203 bcftools @EXECUTABLE@