Mercurial > repos > iuc > bcftools_plugin_setgt

comparison bcftools_plugin_setgt.xml @ 5:b4477c34076a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 10853682ffb2e9776256bb63c899ef5c5fe0007e
author iuc
date Thu, 13 Apr 2017 16:30:28 -0400
parents 788510a3597a
children 1e4d7ee505f1
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4:788510a3597a 5:b4477c34076a
11 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
12 @PREPARE_ENV@ 12 @PREPARE_ENV@
13 @PREPARE_INPUT_FILE@ 13 @PREPARE_INPUT_FILE@
14 #set $section = $sec_restrict 14 #set $section = $sec_restrict
15 @PREPARE_TARGETS_FILE@ 15 @PREPARE_TARGETS_FILE@
16 @PREPARE_REGIONS_FILE@
16 bcftools plugin @EXECUTABLE@ 17 bcftools plugin @EXECUTABLE@
17 18
18 ## VCF input section 19 ## VCF input section
19 #set $section = $sec_restrict 20 #set $section = $sec_restrict
20 @INCLUDE@ 21 @INCLUDE@
31 ## Plugin section 32 ## Plugin section
32 #set $section = $sec_plugin 33 #set $section = $sec_plugin
33 -- 34 --
34 -t '$section.target_gt' 35 -t '$section.target_gt'
35 --new-gt '$section.new_gt' 36 --new-gt '$section.new_gt'
36 > "$output_file" 37 > '$output_file'
37 ]]> 38 ]]>
38 </command> 39 </command>
39 <inputs> 40 <inputs>
40 <expand macro="macro_input" /> 41 <expand macro="macro_input" />
41 <section name="sec_restrict" expanded="false" title="Restrict to"> 42 <section name="sec_restrict" expanded="false" title="Restrict to">