Mercurial > repos > iuc > bcftools_plugin_missing2ref

comparison bcftools_plugin_missing2ref.xml @ 9:a9fe9aa253fe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 12:46:03 -0400
parents d43b5e0cbf74
children c56cd5b63a89
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8:d43b5e0cbf74 9:a9fe9aa253fe
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@+galaxy1">
3 <description>plugin Set missing genotypes</description> 3 <description>plugin Set missing genotypes</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">missing2ref</token> 5 <token name="@EXECUTABLE@">missing2ref</token>
6 <token name="@PLUGIN_ID@">missing2ref</token> 6 <token name="@PLUGIN_ID@">missing2ref</token>
7 <import>macros.xml</import> 7 <import>macros.xml</import>
41 ]]> 41 ]]>
42 </command> 42 </command>
43 <inputs> 43 <inputs>
44 <expand macro="macro_input" /> 44 <expand macro="macro_input" />
45 <section name="sec_restrict" expanded="false" title="Restrict to"> 45 <section name="sec_restrict" expanded="false" title="Restrict to">
46 <expand macro="macro_regions" /> 46 <expand macro="macro_restrict" />
47 <expand macro="macro_targets" /> 47 <expand macro="macro_restrict" type="target" label_type="Target" />
48 <expand macro="macro_include" /> 48 <expand macro="macro_include" />
49 <expand macro="macro_exclude" /> 49 <expand macro="macro_exclude" />
50 </section> 50 </section>
51 <section name="sec_plugin" expanded="true" title="Plugin Options"> 51 <section name="sec_plugin" expanded="true" title="Plugin Options">
52 <param name="phased" type="boolean" truevalue="--phased" falsevalue="" checked="false" label="Phased" help="Set to 0|0" /> 52 <param name="phased" type="boolean" truevalue="--phased" falsevalue="" checked="false" label="Phased" help="Set to 0|0" />