Mercurial > repos > iuc > bcftools_plugin_fixploidy

diff bcftools_plugin_fixploidy.xml @ 25:adb1d6cb6568 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/bcftools commit f6efda26965eb73c9107d367fd5ffdf246ed0dbc
author iuc
date Tue, 02 Dec 2025 07:54:23 +0000
parents 5d8dc10d436c
children
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--- a/bcftools_plugin_fixploidy.xml	Sun Aug 18 09:52:17 2024 +0000
+++ b/bcftools_plugin_fixploidy.xml	Tue Dec 02 07:54:23 2025 +0000
@@ -9,7 +9,6 @@
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="aggressive"><![CDATA[
-@PREPARE_ENV@
 @PREPARE_INPUT_FILE@
 #set $section = $sec_restrict
 @PREPARE_TARGETS_FILE@
@@ -45,8 +44,8 @@
     <inputs>
         <expand macro="macro_input" />
         <section name="sec_restrict" expanded="false" title="Restrict to">
-            <expand macro="macro_restrict" />
-            <expand macro="macro_restrict" type="target" label_type="Target" />
+            <expand macro="macro_region_restrict" />
+            <expand macro="macro_target_restrict" />
             <expand macro="macro_include" />
             <expand macro="macro_exclude" />
         </section>
@@ -63,8 +62,10 @@
     <tests>
         <test>
             <param name="input_file" ftype="vcf" value="fixploidy.vcf" />
-            <param name="sex" ftype="tabular" value="fixploidy.samples" />
-            <param name="ploidy_file" ftype="tabular" value="fixploidy.ploidy" />
+            <section name="sec_plugin">
+                <param name="sex" ftype="tabular" value="fixploidy.samples" />
+                <param name="ploidy_file" ftype="tabular" value="fixploidy.ploidy" />
+            </section>
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>