Mercurial > repos > iuc > bcftools_plugin_dosage

comparison bcftools_plugin_dosage.xml @ 9:48b85808feb8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 12:41:55 -0400
parents 8c2453c32ab5
children c83f5f276894
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8:8c2453c32ab5 9:48b85808feb8
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@+galaxy1">
3 <description>plugin genotype dosage</description> 3 <description>plugin genotype dosage</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">dosage</token> 5 <token name="@EXECUTABLE@">dosage</token>
6 <token name="@PLUGIN_ID@">dosage</token> 6 <token name="@PLUGIN_ID@">dosage</token>
7 <import>macros.xml</import> 7 <import>macros.xml</import>
37 ]]> 37 ]]>
38 </command> 38 </command>
39 <inputs> 39 <inputs>
40 <expand macro="macro_input" /> 40 <expand macro="macro_input" />
41 <section name="sec_restrict" expanded="false" title="Restrict to"> 41 <section name="sec_restrict" expanded="false" title="Restrict to">
42 <expand macro="macro_regions" /> 42 <expand macro="macro_restrict" />
43 <expand macro="macro_targets" /> 43 <expand macro="macro_restrict" type="target" label_type="Target" />
44 <expand macro="macro_include" /> 44 <expand macro="macro_include" />
45 <expand macro="macro_exclude" /> 45 <expand macro="macro_exclude" />
46 </section> 46 </section>
47 <section name="sec_plugin" expanded="true" title="Plugin Options"> 47 <section name="sec_plugin" expanded="true" title="Plugin Options">
48 <param name="tags" type="text" value="" optional="true" label="VCF tag to determine the dosage from [PL,GL,GT]"> 48 <param name="tags" type="text" value="" optional="true" label="VCF tag to determine the dosage from [PL,GL,GT]">