Mercurial > repos > iuc > bcftools_plugin_dosage

comparison bcftools_plugin_dosage.xml @ 5:481f32fc6827 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 10853682ffb2e9776256bb63c899ef5c5fe0007e
author iuc
date Thu, 13 Apr 2017 16:24:18 -0400
parents 7d7d7c553384
children 8c2453c32ab5
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4:7d7d7c553384 5:481f32fc6827
11 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
12 @PREPARE_ENV@ 12 @PREPARE_ENV@
13 @PREPARE_INPUT_FILE@ 13 @PREPARE_INPUT_FILE@
14 #set $section = $sec_restrict 14 #set $section = $sec_restrict
15 @PREPARE_TARGETS_FILE@ 15 @PREPARE_TARGETS_FILE@
16 @PREPARE_REGIONS_FILE@
16 17
17 bcftools plugin @EXECUTABLE@ 18 bcftools plugin @EXECUTABLE@
18 19
19 ## VCF input section 20 ## VCF input section
20 #set $section = $sec_restrict 21 #set $section = $sec_restrict
29 ## Plugin section 30 ## Plugin section
30 #set $section = $sec_plugin 31 #set $section = $sec_plugin
31 #if $section.tags: 32 #if $section.tags:
32 -- --tags "${section.tags}" 33 -- --tags "${section.tags}"
33 #end if 34 #end if
34 > "$output_file" 35 > '$output_file'
35 36
36 ]]> 37 ]]>
37 </command> 38 </command>
38 <inputs> 39 <inputs>
39 <expand macro="macro_input" /> 40 <expand macro="macro_input" />