Mercurial > repos > iuc > bcftools_norm

comparison bcftools_norm.xml @ 17:5b03f9222727 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
author iuc
date Sat, 15 Jan 2022 13:05:26 +0000
parents 88b07efb24fe
children 2760ffec552b
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16:626e2d85b0f4 17:5b03f9222727
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description> 3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description>
4 <expand macro="bio_tools" />
5 <macros> 4 <macros>
6 <token name="@EXECUTABLE@">norm</token> 5 <token name="@EXECUTABLE@">norm</token>
7 <import>macros.xml</import> 6 <import>macros.xml</import>
8 </macros> 7 </macros>
8 <expand macro="bio_tools" />
9 <expand macro="requirements"> 9 <expand macro="requirements">
10 <expand macro="samtools_requirement"/> 10 <expand macro="samtools_requirement"/>
11 <!-- gawk only required for current bcftools norm bug workaround 11 <!-- gawk only required for current bcftools norm bug workaround
12 Remove once fixed (see command section below --> 12 Remove once fixed (see command section below -->
13 <requirement type="package" version="5.0.1">gawk</requirement> 13 <requirement type="package" version="5.0.1">gawk</requirement>