Mercurial > repos > iuc > bcftools_norm

comparison bcftools_norm.xml @ 2:4b0144f7be6a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 5725fea947162618d77de7b8011d18b2f16c7094
author iuc
date Sat, 21 Jan 2017 06:53:28 -0500
parents f236dbcf9ffb
children 59268ce456d1
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1:cefee4d7104a 2:4b0144f7be6a
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description> 3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">norm</token> 5 <token name="@EXECUTABLE@">norm</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
92 <option value="both">both - records should be split or merged</option> 92 <option value="both">both - records should be split or merged</option>
93 <option value="any">any - SNPs and indels should be merged into a single record</option> 93 <option value="any">any - SNPs and indels should be merged into a single record</option>
94 </param> 94 </param>
95 <param name="strict_filter" type="boolean" truevalue="--strict-filter" falsevalue="" label="Strict Filter" 95 <param name="strict_filter" type="boolean" truevalue="--strict-filter" falsevalue="" label="Strict Filter"
96 help="When merging (-m+), merged site is PASS only if all sites being merged PASS" /> 96 help="When merging (-m+), merged site is PASS only if all sites being merged PASS" />
97 <param name="site_win" type="integer" label="Site Window" default="1000" optional="True" 97 <param name="site_win" type="integer" label="Site Window" value="1000" optional="True"
98 help="(-w, --site-win) Buffer for sorting lines which changed position during realignment" /> 98 help="(-w, --site-win) Buffer for sorting lines which changed position during realignment" />
99 </section> 99 </section>
100 100
101 <expand macro="macro_select_output_type" /> 101 <expand macro="macro_select_output_type" />
102 </inputs> 102 </inputs>