Mercurial > repos > iuc > bcftools_mpileup
diff bcftools_mpileup.xml @ 20:4f3623db0d08 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 5b9441b69b3c176ab7b89609495f66cb29d1091a
| author | iuc |
|---|---|
| date | Sun, 11 Aug 2024 21:26:49 +0000 |
| parents | d8a653c52f61 |
| children | 2f6e26a65721 |
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--- a/bcftools_mpileup.xml Tue Jul 16 16:41:17 2024 +0000 +++ b/bcftools_mpileup.xml Sun Aug 11 21:26:49 2024 +0000 @@ -1,5 +1,4 @@ -<?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy4" profile="@PROFILE@"> <description>Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files</description> <macros> <token name="@EXECUTABLE@">mpileup</token> @@ -93,7 +92,7 @@ -F "${section.perform_indel_calling.minimum_gapped_read_fraction}" ${section.perform_indel_calling.gapped_read_per_sample} #if len( $section.perform_indel_calling.platform_list_repeat ): - -P "${ ",".join( [ str( platform.platform_entry ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }" + -P "${ ",".join( [ str( platform['platform_entry'] ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }" #end if #end if