Mercurial > repos > iuc > bcftools_gtcheck

diff bcftools_gtcheck.xml @ 25:d6f8a234358c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/bcftools commit f6efda26965eb73c9107d367fd5ffdf246ed0dbc
author iuc
date Tue, 02 Dec 2025 07:45:56 +0000
parents b3732c5629a4
children
line wrap: on
line diff
--- a/bcftools_gtcheck.xml	Sun Aug 18 09:40:48 2024 +0000
+++ b/bcftools_gtcheck.xml	Tue Dec 02 07:45:56 2025 +0000
@@ -8,7 +8,6 @@
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="aggressive"><![CDATA[
-@PREPARE_ENV@
 @PREPARE_INPUT_FILE@
 #set $section = $sec_restrict
 @PREPARE_TARGETS_FILE@
@@ -73,8 +72,8 @@
     <inputs>
         <expand macro="macro_input" />
         <section name="sec_restrict" expanded="false" title="Restrict to">
-            <expand macro="macro_restrict" />
-            <expand macro="macro_restrict" type="target" label_type="Target" />
+            <expand macro="macro_region_restrict" />
+            <expand macro="macro_target_restrict" />
         </section>
         <section name="sec_default" expanded="true" title="Default Options">
             <param name="genotypes" type="data" format="vcf,bcf" label="Genotypes to compare against" optional="True"
@@ -94,7 +93,7 @@
             <param name="input_file" ftype="vcf" value="view.vcf" />
             <output name="output_file">
                 <assert_contents>
-                    <has_text_matching expression="DC\tNA00002\tNA00001\t6"/>
+                    <has_text_matching expression="DCv2\tNA00002\tNA00001\t6"/>
                 </assert_contents>
             </output>
         </test>
@@ -111,7 +110,7 @@
 
 @BCFTOOLS_MANPAGE@#@EXECUTABLE@
 
-@BCFTOOLS_WIKI@
+@BCFTOOLS_HOWTOS@
 
 ]]>
     </help>