Mercurial > repos > iuc > bcftools_gtcheck

comparison bcftools_gtcheck.xml @ 9:64aa9ca7e702 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 12:43:58 -0400
parents 2ba1da9c7f89
children 2f1d63010138
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8:2ba1da9c7f89 9:64aa9ca7e702
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1">
3 <description>Check sample identity</description> 3 <description>Check sample identity</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">gtcheck</token> 5 <token name="@EXECUTABLE@">gtcheck</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
75 ]]> 75 ]]>
76 </command> 76 </command>
77 <inputs> 77 <inputs>
78 <expand macro="macro_input" /> 78 <expand macro="macro_input" />
79 <section name="sec_restrict" expanded="false" title="Restrict to"> 79 <section name="sec_restrict" expanded="false" title="Restrict to">
80 <expand macro="macro_regions" /> 80 <expand macro="macro_restrict" />
81 <expand macro="macro_targets" /> 81 <expand macro="macro_restrict" type="target" label_type="Target" />
82 </section> 82 </section>
83 <section name="sec_default" expanded="true" title="Default Options"> 83 <section name="sec_default" expanded="true" title="Default Options">
84 <param name="genotypes" type="data" format="vcf,bcf" label="Genotypes to compare against" optional="True" 84 <param name="genotypes" type="data" format="vcf,bcf" label="Genotypes to compare against" optional="True"
85 help="(-g) Checks sample identity or wehn omitted a multi-sample cross-check is performed"/> 85 help="(-g) Checks sample identity or wehn omitted a multi-sample cross-check is performed"/>
86 <param name="target_sample" type="text" label="Target Sample" optional="True" help="Target sample in the -g file (used only for plotting)" /> 86 <param name="target_sample" type="text" label="Target Sample" optional="True" help="Target sample in the -g file (used only for plotting)" />