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comparison bcftools_filter.xml @ 9:ba05273f8a35 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 12:46:43 -0400
parents 10ee6ff77d77
children 7f5eb4557d01
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8:10ee6ff77d77 9:ba05273f8a35
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1">
3 <description>Apply fixed-threshold filters</description> 3 <description>Apply fixed-threshold filters</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">filter</token> 5 <token name="@EXECUTABLE@">filter</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
50 ]]> 50 ]]>
51 </command> 51 </command>
52 <inputs> 52 <inputs>
53 <expand macro="macro_input" /> 53 <expand macro="macro_input" />
54 <section name="sec_restrict" expanded="false" title="Restrict to"> 54 <section name="sec_restrict" expanded="false" title="Restrict to">
55 <expand macro="macro_regions" /> 55 <expand macro="macro_restrict" />
56 <expand macro="macro_targets" /> 56 <expand macro="macro_restrict" type="target" label_type="Target" />
57 <expand macro="macro_include" /> 57 <expand macro="macro_include" />
58 <expand macro="macro_exclude" /> 58 <expand macro="macro_exclude" />
59 </section> 59 </section>
60 <section name="sec_filter" expanded="false" title="Filter Options"> 60 <section name="sec_filter" expanded="false" title="Filter Options">
61 <param name="SnpGap" type="integer" label="Snpgap" optional="True" help="(-g) Filter SNPs within &lt;int&gt; base pairs of an indel" /> 61 <param name="SnpGap" type="integer" label="Snpgap" optional="True" help="(-g) Filter SNPs within &lt;int&gt; base pairs of an indel" />