Mercurial > repos > iuc > bcftools_filter

comparison bcftools_filter.xml @ 5:4506e0f42863 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 10853682ffb2e9776256bb63c899ef5c5fe0007e
author iuc
date Thu, 13 Apr 2017 16:22:41 -0400
parents 3c1661895a78
children 10ee6ff77d77
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4:3c1661895a78 5:4506e0f42863
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 @PREPARE_ENV@ 11 @PREPARE_ENV@
12 @PREPARE_INPUT_FILE@ 12 @PREPARE_INPUT_FILE@
13 #set $section = $sec_restrict 13 #set $section = $sec_restrict
14 @PREPARE_TARGETS_FILE@ 14 @PREPARE_TARGETS_FILE@
15 @PREPARE_REGIONS_FILE@
15 16
16 bcftools @EXECUTABLE@ 17 bcftools @EXECUTABLE@
17 18
18 ## Filter section 19 ## Filter section
19 #set $section = $sec_filter 20 #set $section = $sec_filter
43 @OUTPUT_TYPE@ 44 @OUTPUT_TYPE@
44 @THREADS@ 45 @THREADS@
45 46
46 ## Primary Input/Outputs 47 ## Primary Input/Outputs
47 @INPUT_FILE@ 48 @INPUT_FILE@
48 > "$output_file" 49 > '$output_file'
49 ]]> 50 ]]>
50 </command> 51 </command>
51 <inputs> 52 <inputs>
52 <expand macro="macro_input" /> 53 <expand macro="macro_input" />
53 <section name="sec_restrict" expanded="false" title="Restrict to"> 54 <section name="sec_restrict" expanded="false" title="Restrict to">