Mercurial > repos > iuc > bcftools_convert_from_vcf

comparison bcftools_convert_from_vcf.xml @ 16:321c66ce1244 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
author iuc
date Sat, 15 Jan 2022 12:50:52 +0000
parents b5b779cbcc4f
children 10e2db4ba5f2
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15:bffa8e52aa8e 16:321c66ce1244
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@ from vcf" id="bcftools_@EXECUTABLE@_from_vcf" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@ from vcf" id="bcftools_@EXECUTABLE@_from_vcf" version="@TOOL_VERSION@">
3 <description>Converts VCF/BCF to IMPUTE2/SHAPEIT formats</description> 3 <description>Converts VCF/BCF to IMPUTE2/SHAPEIT formats</description>
4 <expand macro="bio_tools" />
5 <macros> 4 <macros>
6 <token name="@EXECUTABLE@">convert</token> 5 <token name="@EXECUTABLE@">convert</token>
7 <import>macros.xml</import> 6 <import>macros.xml</import>
8 <xml name="macro_vcf_ids"> 7 <xml name="macro_vcf_ids">
9 <param name="vcf_ids" type="boolean" truevalue="--vcf-ids" falsevalue="" checked="false" 8 <param name="vcf_ids" type="boolean" truevalue="--vcf-ids" falsevalue="" checked="false"
43 #elif $convert.sex_info.sex_info_src == 'history': 42 #elif $convert.sex_info.sex_info_src == 'history':
44 --sex "$convert.sex_info.sex_info_file" 43 --sex "$convert.sex_info.sex_info_file"
45 #end if 44 #end if
46 </token> 45 </token>
47 </macros> 46 </macros>
47 <expand macro="bio_tools" />
48 <expand macro="requirements" /> 48 <expand macro="requirements" />
49 <expand macro="version_command" /> 49 <expand macro="version_command" />
50 <command detect_errors="aggressive"><![CDATA[ 50 <command detect_errors="aggressive"><![CDATA[
51 @PREPARE_ENV@ 51 @PREPARE_ENV@
52 @PREPARE_INPUT_FILE@ 52 @PREPARE_INPUT_FILE@