Mercurial > repos > iuc > bcftools_concat

comparison bcftools_concat.xml @ 2:f3204f9cb5f0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 5725fea947162618d77de7b8011d18b2f16c7094
author iuc
date Sat, 21 Jan 2017 06:51:43 -0500
parents d4b771adb614
children 21f4a914f1aa
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1:369d3e6c33ad 2:f3204f9cb5f0
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
3 <description>Concatenate or combine VCF/BCF files</description> 3 <description>Concatenate or combine VCF/BCF files</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">concat</token> 5 <token name="@EXECUTABLE@">concat</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
69 </conditional> 69 </conditional>
70 <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate" 70 <param name="ligate" type="boolean" truevalue="--ligate" falsevalue="" label="Ligate"
71 help="Ligate phased VCFs by matching phase at overlapping haplotypes" /> 71 help="Ligate phased VCFs by matching phase at overlapping haplotypes" />
72 <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps" 72 <param name="compact_PS" type="boolean" truevalue="--compact-PS" falsevalue="" label="Compact Ps"
73 help="Do not output PS tag at each site, only at the start of a new phase set block." /> 73 help="Do not output PS tag at each site, only at the start of a new phase set block." />
74 <param name="min_PQ" type="integer" label="Min Pq" default="30" optional="True" 74 <param name="min_PQ" type="integer" label="Min Pq" value="30" optional="True"
75 help="Break phase set if phasing quality is lower than &lt;int&gt;" /> 75 help="Break phase set if phasing quality is lower than &lt;int&gt;" />
76 </section> 76 </section>
77 <expand macro="macro_select_output_type" /> 77 <expand macro="macro_select_output_type" />
78 </inputs> 78 </inputs>
79 <outputs> 79 <outputs>