Mercurial > repos > iuc > bcftools_call

comparison bcftools_call.xml @ 18:655e01b6caea draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
author iuc
date Sat, 15 Jan 2022 13:16:38 +0000
parents ff81e3597db6
children 667a733b45f1
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17:9a68cd7452a3 18:655e01b6caea
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
3 <description>SNP/indel variant calling from VCF/BCF</description> 3 <description>SNP/indel variant calling from VCF/BCF</description>
4 <expand macro="bio_tools" />
5 <macros> 4 <macros>
6 <token name="@EXECUTABLE@">call</token> 5 <token name="@EXECUTABLE@">call</token>
7 <import>macros.xml</import> 6 <import>macros.xml</import>
8 <xml name="macro_novel_rate"> 7 <xml name="macro_novel_rate">
9 <param name="novel_rate_snp" type="float" value="" optional="true" label="Novel rate for SNPs" 8 <param name="novel_rate_snp" type="float" value="" optional="true" label="Novel rate for SNPs"
27 #if len($novel_rate) > 0: 26 #if len($novel_rate) > 0:
28 --novel-rate '#echo ','.join($novel_rate)#' 27 --novel-rate '#echo ','.join($novel_rate)#'
29 #end if 28 #end if
30 </token> 29 </token>
31 </macros> 30 </macros>
31 <expand macro="bio_tools" />
32 <expand macro="requirements" /> 32 <expand macro="requirements" />
33 <expand macro="version_command" /> 33 <expand macro="version_command" />
34 <command detect_errors="aggressive"><![CDATA[ 34 <command detect_errors="aggressive"><![CDATA[
35 @PREPARE_ENV@ 35 @PREPARE_ENV@
36 @PREPARE_INPUT_FILE@ 36 @PREPARE_INPUT_FILE@