Mercurial > repos > iuc > bbtools_bbnorm

comparison bbnorm.xml @ 3:78e3ecfdf6df draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 4c1b74f1d14c5cac8ed806de0bb207d00e7a0e51
author iuc
date Tue, 19 Nov 2024 20:06:47 +0000
parents aa7b97bc2f3f
children
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2:5ed9dfada0c7 3:78e3ecfdf6df
7 <expand macro="bio.tools"/> 7 <expand macro="bio.tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <stdio> 9 <stdio>
10 <regex match="This table is (very|crazy|totally) full, which may reduce accuracy. Ideal load is under" source="stderr" level="fatal_oom" description="Too low memory - generated results might be inaccurate."/> 10 <regex match="This table is (very|crazy|totally) full, which may reduce accuracy. Ideal load is under" source="stderr" level="fatal_oom" description="Too low memory - generated results might be inaccurate."/>
11 </stdio> 11 </stdio>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="aggressive"><![CDATA[
13 ## bbtools recommends keeping a proper file extension to determine the input format 13 ## bbtools recommends keeping a proper file extension to determine the input format
14 ## so we hardcode them in the below block. 14 ## so we hardcode them in the below block.
15 #if str($input_type_cond.input_type) == 'paired': 15 #if str($input_type_cond.input_type) == 'paired':
16 #set read1 = $input_type_cond.reads_collection['forward'] 16 #set read1 = $input_type_cond.reads_collection['forward']
17 #set read2 = $input_type_cond.reads_collection['reverse'] 17 #set read2 = $input_type_cond.reads_collection['reverse']