Mercurial > repos > iuc > bbtools_bbmap
comparison macros.xml @ 0:2b64db8ec69e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit 3682ff4e2e47438e975fc04f92469eca7814fcfa"
| author | iuc |
|---|---|
| date | Mon, 04 Oct 2021 12:13:52 +0000 |
| parents | |
| children | 7bc91654244d |
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| -1:000000000000 | 0:2b64db8ec69e |
|---|---|
| 1 <macros> | |
| 2 <token name="@WRAPPER_VERSION@">1.0.0</token> | |
| 3 <token name="@VERSION_SUFFIX@">1.0.0</token> | |
| 4 <token name="@PROFILE@">20.09</token> | |
| 5 <xml name="requirements"> | |
| 6 <requirements> | |
| 7 <requirement type="package" version="38.92">bbmap</requirement> | |
| 8 </requirements> | |
| 9 </xml> | |
| 10 <macro name="dbKeyActionsBBMap"> | |
| 11 <expand macro="dbKeyActions"> | |
| 12 <option type="from_data_table" name="fasta_indexes" column="1" offset="0"> | |
| 13 <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/> | |
| 14 <filter type="param_value" ref="ref_source_cond.reference" column="1"/> | |
| 15 </option> | |
| 16 </expand> | |
| 17 </macro> | |
| 18 <macro name="dbKeyActions"> | |
| 19 <actions> | |
| 20 <conditional name="ref_source_cond.ref_source"> | |
| 21 <when value="cached"> | |
| 22 <action type="metadata" name="dbkey"> | |
| 23 <yield/> | |
| 24 </action> | |
| 25 </when> | |
| 26 <when value="history"> | |
| 27 <action type="metadata" name="dbkey"> | |
| 28 <option type="from_param" name="ref_source_cond.reference" param_attribute="dbkey"/> | |
| 29 </action> | |
| 30 </when> | |
| 31 </conditional> | |
| 32 </actions> | |
| 33 </macro> | |
| 34 <macro name="reference_source_cond"> | |
| 35 <conditional name="ref_source_cond"> | |
| 36 <param name="ref_source" type="select" label="Select reference genome source; a cached reference or one from the history"> | |
| 37 <option value="cached" selected="True">Use a cached reference</option> | |
| 38 <option value="history">Use a reference from the history</option> | |
| 39 </param> | |
| 40 <when value="cached"> | |
| 41 <param name="reference" type="select" label="Using reference genome"> | |
| 42 <options from_data_table="fasta_indexes"> | |
| 43 <filter type="sort_by" column="2"/> | |
| 44 <validator type="no_options" message="A built-in reference genome is not available"/> | |
| 45 </options> | |
| 46 </param> | |
| 47 </when> | |
| 48 <when value="history"> | |
| 49 <param name="reference" type="data" format="fasta" label="Using reference genome"> | |
| 50 <validator type="no_options" message="The current history does not include a fasta dataset"/> | |
| 51 </param> | |
| 52 </when> | |
| 53 </conditional> | |
| 54 </macro> | |
| 55 <xml name="citations"> | |
| 56 <citations> | |
| 57 <citation type="doi"> | |
| 58 https://doi.org/10.1371/journal.pone.0185056 | |
| 59 </citation> | |
| 60 </citations> | |
| 61 </xml> | |
| 62 </macros> | |
| 63 |