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comparison bandage_image.xml @ 8:97e44e92e5b9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage commit c7fe7b3a7c6e1f2109868093b9ce5321c2979a24
author iuc
date Tue, 01 Nov 2022 15:08:26 +0000
parents 53ccc02313e0
children
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7:53ccc02313e0 8:97e44e92e5b9
1 <tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy3" profile="18.01"> 1 <tool id="bandage_image" name="Bandage Image" version="@TOOL_VERSION@+galaxy4" profile="21.05">
2 <description>visualize de novo assembly graphs</description> 2 <description>visualize de novo assembly graphs</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
19 --width '$width' 19 --width '$width'
20 #end if 20 #end if
21 #if $fontsize: 21 #if $fontsize:
22 --fontsize '$fontsize' 22 --fontsize '$fontsize'
23 #end if 23 #end if
24 #if $nodewidth:
25 --nodewidth '$nodewidth'
26 #end if
24 $names 27 $names
25 $lengths 28 $lengths
26 ]]></command> 29 ]]></command>
27 <inputs> 30 <inputs>
28 <param name="input_file" type="data" format="txt" label="Graphical Fragment Assembly" help="Supports multiple assembly graph formats: LastGraph (Velvet), FASTG (SPAdes), Trinity.fasta, ASQG and GFA."/> 31 <param name="input_file" type="data" format="txt" label="Graphical Fragment Assembly" help="Supports multiple assembly graph formats: LastGraph (Velvet), FASTG (SPAdes), Trinity.fasta, ASQG and GFA."/>
29 <param argument="--height" type="integer" min="1" value="1000" optional="True" label="Image height" help="If only height or width is set, the other will be determined automatically. If both are set, the image will be exactly that size. Default: 1000."/> 32 <param argument="--height" type="integer" min="1" value="1000" optional="True" label="Image height" help="If only height or width is set, the other will be determined automatically. If both are set, the image will be exactly that size. Default: 1000."/>
30 <param argument="--width" type="integer" min="1" optional="True" label="Image width" help="If only height or width is set, the other will be determined automatically. If both are set, the image will be exactly that size. Default: not set."/> 33 <param argument="--width" type="integer" min="1" optional="True" label="Image width" help="If only height or width is set, the other will be determined automatically. If both are set, the image will be exactly that size. Default: not set."/>
31 <param argument="--names" type="boolean" truevalue="--names" falsevalue="" label="Node name labels?"/> 34 <param argument="--names" type="boolean" truevalue="--names" falsevalue="" label="Node name labels?"/>
32 <param argument="--lengths" type="boolean" truevalue="--lengths" falsevalue="" label="Node length labels?"/> 35 <param argument="--lengths" type="boolean" truevalue="--lengths" falsevalue="" label="Node length labels?"/>
33 <param argument="--fontsize" type="integer" min="5" optional="true" label="Font size" help="Node font size?"/> 36 <param argument="--fontsize" type="integer" min="5" optional="true" label="Font size" help="Node font size?"/>
37 <param argument="--nodewidth" type="float" min="5" optional="true" label="Node width" help="Node width for graph image?" />
34 <param name="output_format" type="select" label="Produce jpg, png or svg file?"> 38 <param name="output_format" type="select" label="Produce jpg, png or svg file?">
35 <option selected="True" value="jpg">.jpg</option> 39 <option selected="True" value="jpg">.jpg</option>
36 <option value="png">.png</option> 40 <option value="png">.png</option>
37 <option value="svg">.svg</option> 41 <option value="svg">.svg</option>
38 </param> 42 </param>