Mercurial > repos > iuc > bakta

comparison test-data/tmp/TEST_4/TEST_4.json @ 0:fc31d760b233 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:26:54 +0000
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-1:000000000000 0:fc31d760b233
1 {
2 "genome": {
3 "genus": null,
4 "species": null,
5 "strain": null,
6 "complete": true,
7 "gram": "?",
8 "translation_table": 4
9 },
10 "stats": {
11 "no_sequences": 1,
12 "size": 1330,
13 "gc": 0.4518796992481203,
14 "n_ratio": 0.0,
15 "n50": 1330,
16 "coding_ratio": 0.6203007518796992
17 },
18 "features": [
19 {
20 "type": "cds",
21 "contig": "p2",
22 "start": 413,
23 "stop": 736,
24 "strand": "+",
25 "gene": null,
26 "product": "hypothetical protein",
27 "start_type": "ATG",
28 "rbs_motif": "GGAG/GAGG",
29 "db_xrefs": [],
30 "frame": 2,
31 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
32 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
33 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
34 "hypothetical": true,
35 "seq_stats": {
36 "molecular_weight": 12072.90819999999,
37 "isoelectric_point": 10.367886161804197
38 },
39 "id": "IHHALPPJCH_1",
40 "locus": "IHHALP_00005"
41 },
42 {
43 "type": "cds",
44 "contig": "p2",
45 "start": 971,
46 "stop": 141,
47 "strand": "-",
48 "gene": null,
49 "product": "hypothetical protein",
50 "start_type": "ATG",
51 "rbs_motif": "AGGA/GGAG/GAGG",
52 "db_xrefs": [],
53 "frame": 1,
54 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
55 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
56 "edge": true,
57 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
58 "hypothetical": true,
59 "seq_stats": {
60 "molecular_weight": 18866.325799999995,
61 "isoelectric_point": 7.696590614318848
62 },
63 "id": "IHHALPPJCH_2",
64 "locus": "IHHALP_00010"
65 }
66 ],
67 "sequences": [
68 {
69 "id": "p2",
70 "description": "[completeness=complete] [topology=circular] [gcode=4] [plasmid-name=pOSAK1]",
71 "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
72 "length": 1330,
73 "complete": true,
74 "type": "plasmid",
75 "topology": "circular",
76 "orig_id": "NC_002127.1",
77 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
78 "name": "pOSAK1"
79 }
80 ],
81 "run": {
82 "start": "2022-08-22 12:58:54",
83 "end": "2022-08-22 12:58:56"
84 },
85 "version": {
86 "bakta": "1.4.2",
87 "db": "3.0"
88 }
89 }