Mercurial > repos > iuc > bakta
comparison test-data/tmp/TEST_2/TEST_2.log @ 0:fc31d760b233 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
| author | iuc |
|---|---|
| date | Thu, 01 Sep 2022 17:26:54 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:fc31d760b233 |
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| 1 parse genome sequences... | |
| 2 imported: 1 | |
| 3 filtered & revised: 1 | |
| 4 plasmids: 1 | |
| 5 | |
| 6 start annotation... | |
| 7 skip tRNA prediction... | |
| 8 skip tmRNA prediction... | |
| 9 predict rRNAs... | |
| 10 found: 0 | |
| 11 predict ncRNAs... | |
| 12 found: 0 | |
| 13 predict ncRNA regions... | |
| 14 found: 0 | |
| 15 predict CRISPR arrays... | |
| 16 found: 0 | |
| 17 predict & annotate CDSs... | |
| 18 predicted: 2 | |
| 19 discarded spurious: 0 | |
| 20 revised translational exceptions: 0 | |
| 21 detected IPSs: 0 | |
| 22 found PSCs: 0 | |
| 23 found PSCCs: 0 | |
| 24 lookup annotations... | |
| 25 conduct expert systems... | |
| 26 amrfinder: 0 | |
| 27 protein sequences: 0 | |
| 28 combine annotations and mark hypotheticals... | |
| 29 analyze hypothetical proteins: 2 | |
| 30 detected Pfam hits: 0 | |
| 31 calculated proteins statistics | |
| 32 revise special cases... | |
| 33 extract sORF... | |
| 34 potential: 22 | |
| 35 discarded due to overlaps: 2 | |
| 36 discarded spurious: 0 | |
| 37 detected IPSs: 0 | |
| 38 found PSCs: 0 | |
| 39 lookup annotations... | |
| 40 filter and combine annotations... | |
| 41 filtered sORFs: 0 | |
| 42 detect gaps... | |
| 43 found: 0 | |
| 44 detect oriCs/oriVs... | |
| 45 found: 0 | |
| 46 detect oriTs... | |
| 47 found: 0 | |
| 48 apply feature overlap filters... | |
| 49 select features and create locus tags... | |
| 50 selected: 2 | |
| 51 | |
| 52 genome statistics: | |
| 53 Genome size: 1,330 bp | |
| 54 Contigs/replicons: 1 | |
| 55 GC: 45.2 % | |
| 56 N50: 1,330 | |
| 57 N ratio: 0.0 % | |
| 58 coding density: 62.0 % | |
| 59 | |
| 60 annotation summary: | |
| 61 tRNAs: 0 | |
| 62 tmRNAs: 0 | |
| 63 rRNAs: 0 | |
| 64 ncRNAs: 0 | |
| 65 ncRNA regions: 0 | |
| 66 CRISPR arrays: 0 | |
| 67 CDSs: 2 | |
| 68 hypotheticals: 2 | |
| 69 signal peptides: 0 | |
| 70 sORFs: 0 | |
| 71 gaps: 0 | |
| 72 oriCs/oriVs: 0 | |
| 73 oriTs: 0 | |
| 74 | |
| 75 export annotation results to: /tmp/tmpqcic3cc5/job_working_directory/000/4/working | |
| 76 human readable TSV... | |
| 77 GFF3... | |
| 78 INSDC GenBank & EMBL... | |
| 79 genome sequences... | |
| 80 feature nucleotide sequences... | |
| 81 translated CDS sequences... | |
| 82 hypothetical TSV... | |
| 83 translated hypothetical CDS sequences... | |
| 84 machine readable JSON... | |
| 85 genome and annotation summary... | |
| 86 | |
| 87 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
| 88 Annotation successfully finished in 0:00 [mm:ss]. |