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comparison test-data/tmp/TEST_2/TEST_2.json @ 0:fc31d760b233 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:26:54 +0000
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-1:000000000000 0:fc31d760b233
1 {
2 "genome": {
3 "genus": "Escherichia",
4 "species": "coli o157:h7",
5 "strain": "Sakai",
6 "plasmid": "pOSAK1",
7 "complete": true,
8 "gram": "?",
9 "translation_table": 11
10 },
11 "stats": {
12 "no_sequences": 1,
13 "size": 1330,
14 "gc": 0.4518796992481203,
15 "n_ratio": 0.0,
16 "n50": 1330,
17 "coding_ratio": 0.6203007518796992
18 },
19 "features": [
20 {
21 "type": "cds",
22 "contig": "NC_002127.1",
23 "start": 413,
24 "stop": 736,
25 "strand": "+",
26 "gene": null,
27 "product": "hypothetical protein",
28 "start_type": "ATG",
29 "rbs_motif": "GGAG/GAGG",
30 "db_xrefs": [],
31 "frame": 2,
32 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
33 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
34 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
35 "hypothetical": true,
36 "seq_stats": {
37 "molecular_weight": 12072.90819999999,
38 "isoelectric_point": 10.367886161804197
39 },
40 "id": "IHHALPPJCH_1",
41 "locus": "IHHALP_00005"
42 },
43 {
44 "type": "cds",
45 "contig": "NC_002127.1",
46 "start": 971,
47 "stop": 141,
48 "strand": "-",
49 "gene": null,
50 "product": "hypothetical protein",
51 "start_type": "ATG",
52 "rbs_motif": "AGGA/GGAG/GAGG",
53 "db_xrefs": [],
54 "frame": 1,
55 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
56 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
57 "edge": true,
58 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
59 "hypothetical": true,
60 "seq_stats": {
61 "molecular_weight": 18866.325799999995,
62 "isoelectric_point": 7.696590614318848
63 },
64 "id": "IHHALPPJCH_2",
65 "locus": "IHHALP_00010"
66 }
67 ],
68 "sequences": [
69 {
70 "id": "NC_002127.1",
71 "description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
72 "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
73 "length": 1330,
74 "complete": true,
75 "type": "plasmid",
76 "topology": "circular",
77 "simple_id": "contig_1",
78 "name": "pOSAK1"
79 }
80 ],
81 "run": {
82 "start": "2022-08-22 12:58:02",
83 "end": "2022-08-22 12:58:03"
84 },
85 "version": {
86 "bakta": "1.4.2",
87 "db": "3.0"
88 }
89 }