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comparison test-data/tmp/TEST_2/TEST_2.gbff @ 0:fc31d760b233 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:26:54 +0000
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-1:000000000000 0:fc31d760b233
1 LOCUS NC_002127.1 1330 bp DNA circular BCT 22-AUG-2022
2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
3 ACCESSION NC_002127
4 VERSION NC_002127.1
5 KEYWORDS .
6 SOURCE Escherichia coli o157:h7 Sakai
7 ORGANISM Escherichia coli o157:h7 Sakai
8 .
9 COMMENT Annotated with Bakta
10 Software: v1.4.2
11 Database: v3.0
12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta
14
15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/22/2022, 12:58:03
17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2
19 Annotation Database version :: v3.0
20 CDSs :: 2
21 tRNAs :: 0
22 tmRNAs :: 0
23 rRNAs :: 0
24 ncRNAs :: 0
25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0
28 oriTs :: 0
29 gaps :: 0
30 FEATURES Location/Qualifiers
31 source 1..1330
32 /mol_type="genomic DNA"
33 /organism="Escherichia coli o157:h7 Sakai"
34 /strain="Sakai"
35 /plasmid="pOSAK1"
36 gene 413..736
37 /locus_tag="IHHALP_00005"
38 CDS 413..736
39 /product="hypothetical protein"
40 /locus_tag="IHHALP_00005"
41 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
42 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
43 MAD"
44 /codon_start=1
45 /transl_table=11
46 /protein_id="gnl|Bakta|IHHALP_00005"
47 /inference="ab initio prediction:Prodigal:2.6"
48 gene complement(join(971..1330,1..141))
49 /locus_tag="IHHALP_00010"
50 CDS complement(join(971..1330,1..141))
51 /product="hypothetical protein"
52 /locus_tag="IHHALP_00010"
53 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
54 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
55 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
56 IPI"
57 /codon_start=1
58 /transl_table=11
59 /protein_id="gnl|Bakta|IHHALP_00010"
60 /inference="ab initio prediction:Prodigal:2.6"
61 ORIGIN
62 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
63 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
64 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
65 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
66 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
67 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
68 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
69 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
70 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
71 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
72 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
73 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
74 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
75 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
76 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
77 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
78 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
79 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
80 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
81 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
82 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
83 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
84 1321 cttctatttg
85 //