Mercurial > repos > iuc > artic_guppyplex

diff test-data/primers.bed @ 5:301e84974e34 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
author iuc
date Fri, 21 Feb 2025 22:12:35 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/primers.bed	Fri Feb 21 22:12:35 2025 +0000
@@ -0,0 +1,58 @@
+MN908947.3	45	73	SARS-CoV-2_1_LEFT	1	+	ATCTCTTGTAGATCTGTTCTCTAAACGA
+MN908947.3	1157	1185	SARS-CoV-2_1_RIGHT	1	-	GCAACTGGATAGACAGATCGAATTCTAC
+MN908947.3	1073	1103	SARS-CoV-2_2_LEFT	2	+	GTCCAAATTTTGTATTTCCCTTAAATTCCA
+MN908947.3	2185	2213	SARS-CoV-2_2_RIGHT	2	-	TAACAATTTCCCAACCGTCTCTAAGAAA
+MN908947.3	2105	2135	SARS-CoV-2_3_LEFT	1	+	CTAACATCTTTGGCACTGTTTATGAAAAAC
+MN908947.3	3226	3246	SARS-CoV-2_3_RIGHT	1	-	CTGCCGTCTTGTTGACCAAC
+MN908947.3	3154	3176	SARS-CoV-2_4_LEFT	2	+	GCCACTTCTGCTGCTCTTCAAC
+MN908947.3	4270	4294	SARS-CoV-2_4_RIGHT	2	-	CTTTGCCTCCTCTACAGTGTAACC
+MN908947.3	4187	4211	SARS-CoV-2_5_LEFT	1	+	GCACTACTGAAATGCTAGCGAAAG
+MN908947.3	5299	5327	SARS-CoV-2_5_RIGHT	1	-	ACTCTATTTGTTGGAGTGTTAACAATGC
+MN908947.3	5198	5229	SARS-CoV-2_6_LEFT	2	+	GGTACATGTCAGCATTAAATCACACTAAAAA
+MN908947.3	6329	6356	SARS-CoV-2_6_RIGHT	2	-	CTGACTTCAGTACATCAAACGAATTTG
+MN908947.3	6250	6279	SARS-CoV-2_7_LEFT	1	+	AATGCAACTAATAAAGCCACGTATAAACC
+MN908947.3	7357	7390	SARS-CoV-2_7_RIGHT	1	-	GGCCATTTGTACAAGATTAATTATTAACCACAT
+MN908947.3	7282	7306	SARS-CoV-2_8_LEFT	2	+	GTACTTGGATTGGCTGCAATCATG
+MN908947.3	8393	8423	SARS-CoV-2_8_RIGHT	2	-	ACATGAAATCTTTAACGTTCCATATCAAAG
+MN908947.3	8320	8343	SARS-CoV-2_9_LEFT	1	+	CGTGACCTTGGTGCTTGTATTGA
+MN908947.3	9430	9460	SARS-CoV-2_9_RIGHT	1	-	CATAAAATAGTAGGCAAGGCATGTTACTAC
+MN908947.3	9347	9380	SARS-CoV-2_10_LEFT	2	+	CTAATATGTTTACACCACTAATTCAACCTATTG
+MN908947.3	10461	10488	SARS-CoV-2_10_RIGHT	2	-	CATGAACCATTAAGGAATGAACCCTTA
+MN908947.3	10381	10411	SARS-CoV-2_11_LEFT	1	+	CAGACTTTTTCAGTGTTAGCTTGTTACAAT
+MN908947.3	11474	11507	SARS-CoV-2_11_RIGHT	1	-	CTACACCTGAGTAGTTAGAAGTAACAGAGATTA
+MN908947.3	11390	11417	SARS-CoV-2_12_LEFT	2	+	GGACACTTATGAATGTCTTGACACTCG
+MN908947.3	12498	12530	SARS-CoV-2_12_RIGHT	2	-	ATGTTGTACCATCACACGTATTTTTATATGTG
+MN908947.3	12419	12444	SARS-CoV-2_13_LEFT	1	+	CAAGAGATGGTTGTGTTCCCTTGAA
+MN908947.3	13530	13559	SARS-CoV-2_13_RIGHT	1	-	TCATTGTAGATGTCAAAAGCCCTGTATAC
+MN908947.3	13458	13480	SARS-CoV-2_14_LEFT	2	+	GTTTTTAAACGGGTTTGCGGTG
+MN908947.3	14579	14599	SARS-CoV-2_14_RIGHT	2	-	GATTACCAGAAGCAGCGTGC
+MN908947.3	14491	14524	SARS-CoV-2_15_LEFT	1	+	TAGGTGTTGTACATAATCAGGATGTAAACTTAC
+MN908947.3	15601	15631	SARS-CoV-2_15_RIGHT	1	-	GACACTCATAAAGTCTGTGTTGTAAATTGC
+MN908947.3	15531	15551	SARS-CoV-2_16_LEFT	2	+	CAAGCTGTCACGGCCAATGT
+MN908947.3	16646	16671	SARS-CoV-2_16_RIGHT	2	-	AAATGTCTCCTCAGTAGCTTTGAGC
+MN908947.3	16571	16596	SARS-CoV-2_17_LEFT	1	+	TGACTGGACAAATGCTGGTGATTAC
+MN908947.3	17686	17711	SARS-CoV-2_17_RIGHT	1	-	TGTGGCCTGTTAATTGCAGATGAAA
+MN908947.3	17595	17627	SARS-CoV-2_18_LEFT	2	+	GCTTTGGTTTATGATAATAAGCTTAAAGCACA
+MN908947.3	18712	18737	SARS-CoV-2_18_RIGHT	2	-	AATCCAATAGAATGATGCCAACAGG
+MN908947.3	18636	18658	SARS-CoV-2_19_LEFT	1	+	AAAATAGGACCTGAGCGCACCT
+MN908947.3	19762	19790	SARS-CoV-2_19_RIGHT	1	-	AGCTCAAATGCTACATTAACAGGTAATG
+MN908947.3	19679	19712	SARS-CoV-2_20_LEFT	2	+	TGAAGTACCAGTTTCTATCATTAATAACACTGT
+MN908947.3	20787	20819	SARS-CoV-2_20_RIGHT	2	-	AAATATTGACACAGTTGAGTATATTTTGCGAC
+MN908947.3	20682	20711	SARS-CoV-2_21_LEFT	1	+	GTTGCTATGCCTAATCTTTACAAAATGCA
+MN908947.3	21801	21828	SARS-CoV-2_21_RIGHT	1	-	CCATCATTAAATGGTAGGACAGGGTTA
+MN908947.3	21695	21723	SARS-CoV-2_22_LEFT	2	+	CCTCAGTTTTACATTCAACTCAGGACTT
+MN908947.3	22825	22858	SARS-CoV-2_22_RIGHT	2	-	GCAGCCTGTAAAATCATCTGGTAATTTATAATT
+MN908947.3	22742	22774	SARS-CoV-2_23_LEFT	1	+	ATGTCTATGCAGATTCATTTGTAATTAGAGGT
+MN908947.3	23868	23895	SARS-CoV-2_23_RIGHT	1	-	GTGTTTTTGTCTTGTTCAACAGCTATT
+MN908947.3	23784	23811	SARS-CoV-2_24_LEFT	2	+	CATTTGTGGTGATTCAACTGAATGCAG
+MN908947.3	24875	24905	SARS-CoV-2_24_RIGHT	2	-	TGATTTGTGGTTCATAAAAATTCCTTTGTG
+MN908947.3	24797	24822	SARS-CoV-2_25_LEFT	1	+	CTGCCATTTGTCATGATGGAAAAGC
+MN908947.3	25911	25937	SARS-CoV-2_25_RIGHT	1	-	TGTTCAGAAATAGGACTTGTTGTGCC
+MN908947.3	25784	25809	SARS-CoV-2_26_LEFT	2	+	GAAATGCCGTTCCAAAAACCCATTA
+MN908947.3	26899	26924	SARS-CoV-2_26_RIGHT	2	-	TAGAAGCGGTCTGGTCAGAATAGTG
+MN908947.3	26818	26840	SARS-CoV-2_27_LEFT	1	+	TTTCAGACTGTTTGCGCGTACG
+MN908947.3	27934	27962	SARS-CoV-2_27_RIGHT	1	-	CTGTAAACTACATTCTTGGTGAAATGCA
+MN908947.3	27832	27860	SARS-CoV-2_28_LEFT	2	+	TATCTTTTGGTTCTCACTTGAACTGCAA
+MN908947.3	28945	28969	SARS-CoV-2_28_RIGHT	2	-	GCTCTCAAGCTGGTTCAATCTGTC
+MN908947.3	28702	28723	SARS-CoV-2_29_LEFT	1	+	GATCACATTGGCACCCGCAAT
+MN908947.3	29779	29802	SARS-CoV-2_29_RIGHT	1	-	GGCTCTTCCATATAGGCAGCTCT