Mercurial > repos > iuc > arriba

diff arriba.xml @ 5:5e03d09d5fdc draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 2d69e621036bf155e02189d4a9a8aa9ee24536e0
author iuc
date Fri, 04 Apr 2025 10:37:49 +0000
parents 98163e8ed458
children
line wrap: on
line diff
--- a/arriba.xml	Wed Sep 25 15:29:26 2024 +0000
+++ b/arriba.xml	Fri Apr 04 10:37:49 2025 +0000
@@ -507,7 +507,7 @@
 
 **INPUTS**
 
-See:  https://arriba.readthedocs.io/en/latest/input-files/
+See:  https://github.com/suhrig/arriba/wiki/04-Input-files
 
   - Alignments
 
@@ -672,14 +672,14 @@
 
 **OPTIONS**
 
-  - Arriba: https://arriba.readthedocs.io/en/latest/command-line-options/#arriba
-  - Visualization: https://arriba.readthedocs.io/en/latest/command-line-options/#draw_fusionsr
-  - RNA STAR: https://arriba.readthedocs.io/en/latest/workflow/
+  - Arriba: https://github.com/suhrig/arriba/wiki/07-Command-line-options#arriba
+  - Visualization: https://github.com/suhrig/arriba/wiki/07-Command-line-options#draw_fusionsr
+  - RNA STAR: https://github.com/suhrig/arriba/wiki/03-Workflow
 
 
 **OUTPUTS**
 
-See:  https://arriba.readthedocs.io/en/latest/output-files/
+See: https://github.com/suhrig/arriba/wiki/05-Output-files
 
   - fusions.tsv
 
@@ -732,7 +732,7 @@
 
 **VISUALIZATION**
 
-See: https://arriba.readthedocs.io/en/latest/visualization/
+See: https://github.com/suhrig/arriba/wiki/06-Visualization
 
   - fusions.pdf
 
@@ -743,11 +743,11 @@
   :height: 467
 
 
-.. _Arriba: https://arriba.readthedocs.io/en/latest/
-.. _INPUTS: https://arriba.readthedocs.io/en/latest/input-files/
-.. _OUTPUTS: https://arriba.readthedocs.io/en/latest/output-files/
-.. _VISUALIZATION: https://arriba.readthedocs.io/en/latest/visualization/
-.. _OPTIONS: https://arriba.readthedocs.io/en/latest/command-line-options/
+.. _Arriba: https://github.com/suhrig/arriba/wiki/01-Home
+.. _INPUTS: https://github.com/suhrig/arriba/wiki/04-Input-files
+.. _OUTPUTS: https://github.com/suhrig/arriba/wiki/05-Output-files
+.. _VISUALIZATION: https://github.com/suhrig/arriba/wiki/06-Visualization
+.. _OPTIONS: https://github.com/suhrig/arriba/wiki/07-Command-line-options
 
     ]]></help>
     <expand macro="citations" />