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comparison macros.xml @ 5:5e03d09d5fdc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 2d69e621036bf155e02189d4a9a8aa9ee24536e0
author iuc
date Fri, 04 Apr 2025 10:37:49 +0000
parents 98163e8ed458
children
comparison
equal deleted inserted replaced
4:98163e8ed458 5:5e03d09d5fdc
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">2.4.0</token> 2 <token name="@TOOL_VERSION@">2.5.0</token>
3 <token name="@VERSION_SUFFIX@">2</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">arriba</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">arriba</requirement>
7 <yield/> 7 <yield/>
8 </requirements> 8 </requirements>
236 each one is scaled individually to the peak coverage of the respective gene. 236 each one is scaled individually to the peak coverage of the respective gene.
237 Default: 0 237 Default: 0
238 </help> 238 </help>
239 <validator type="regex" message="">^\d+(,\d+)?$</validator> 239 <validator type="regex" message="">^\d+(,\d+)?$</validator>
240 </param> 240 </param>
241 <param argument="--plotPanels" type="boolean" label="Plot panels" truevalue="TRUE" falsevalue="FALSE" help="The output will contain a panel for each fusion partner"/>
241 </section> 242 </section>
242 </xml> 243 </xml>
243 <token name="@DRAW_FUSIONS@"> 244 <token name="@DRAW_FUSIONS@">
244 draw_fusions.R 245 draw_fusions.R
245 --fusions='$fusions' 246 --fusions='$fusions'
299 --fontFamily=$visualization.options.fontFamily 300 --fontFamily=$visualization.options.fontFamily
300 #end if 301 #end if
301 #if str($visualization.options.fontSize) 302 #if str($visualization.options.fontSize)
302 --fontSize=$visualization.options.fontSize 303 --fontSize=$visualization.options.fontSize
303 #end if 304 #end if
305 #if $visualization.options.plotPanels
306 --plotPanels=$visualization.options.plotPanels
307 #end if
304 </token> 308 </token>
305 </macros> 309 </macros>