Mercurial > repos > iuc > annotatemyids

comparison annotateMyIDs.xml @ 10:40e7cdca3e8c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit 341ee309143af2e0d639fd7eb20d6bc03596b28a"
author iuc
date Fri, 09 Jul 2021 14:19:34 +0000
parents f2b1efa88ba0
children 344471c33167
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9:f2b1efa88ba0 10:40e7cdca3e8c
1 <tool id="annotatemyids" name="annotateMyIDs" version="3.12.0"> 1 <tool id="annotatemyids" name="annotateMyIDs" version="3.12.0+galaxy1">
2 <description>annotate a generic set of identifiers</description> 2 <description>annotate a generic set of identifiers</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement> 4 <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement>
5 <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement> 5 <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement>
6 <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement> 6 <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement>
100 </param> 100 </param>
101 <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" /> 101 <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" />
102 <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" /> 102 <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" />
103 </inputs> 103 </inputs>
104 <outputs> 104 <outputs>
105 <data name="out_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Annotated IDs" /> 105 <data name="out_tab" format="tabular" label="${tool.name} on ${on_string}: Annotated IDs" />
106 <data name="out_rscript" format="txt" from_work_dir="*.txt" label="${tool.name} on ${on_string}: Rscript"> 106 <data name="out_rscript" format="txt" label="${tool.name} on ${on_string}: Rscript">
107 <filter>rscriptOpt is True</filter> 107 <filter>rscriptOpt is True</filter>
108 </data> 108 </data>
109 </outputs> 109 </outputs>
110 <tests> 110 <tests>
111 <!-- Ensure output table works --> 111 <!-- Ensure output table works -->