Mercurial > repos > iuc > anndata_manipulate

diff manipulate.xml @ 7:1cd7d1a94481 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 033c2d20a0c73cd84c5c3aee73ae224183a9c1c2"
author iuc
date Wed, 22 Jul 2020 16:16:17 +0000
parents ef824f3d03d5
children f1b4b1591958
line wrap: on
line diff
--- a/manipulate.xml	Mon Feb 10 10:13:57 2020 +0000
+++ b/manipulate.xml	Wed Jul 22 16:16:17 2020 +0000
@@ -26,7 +26,7 @@
     #for i, filepath in enumerate($manipulate.other_adatas)
 adata_$i = ad.read('$filepath')
     #end for
-adata.concatenate(
+adata = adata.concatenate(
     #for i, filepath in enumerate($manipulate.other_adatas)
     adata_$i,
     #end for
@@ -167,8 +167,8 @@
                 <param name="key" type="text" value="" label="Key for observations or variables annotation" help="Annotation key in obs or var"/>
                 <param name="categories" type="text" value="" label="Comma-separated list of new categories" help="It should be the same number as the old categories"/>
             </when>
-            <when value="strings_to_categoricals"/>
-            <when value="transpose"/>
+            <when value="strings_to_categoricals" ></when>
+            <when value="transpose" ></when>
             <when value="add_annotation">
                 <param name="var_obs" type="select" label="What to annotate?">
                     <option value="var">Variables (var)</option>
@@ -233,6 +233,7 @@
                     </when>
                 </conditional>
             </when>
+            <when value="save_raw"></when>
         </conditional>
     </inputs>
     <outputs>