--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro.xml	Fri May 26 09:18:37 2023 +0000
@@ -0,0 +1,43 @@
+<macros>
+    <token name="@TOOL_VERSION@">3.11.14</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.05</token>
+    <xml name="version_command">
+        <version_command><![CDATA[amrfinder --version]]></version_command>
+    </xml>
+    <xml name="edam">
+      <edam_operations>
+          <edam_operation>operation_3482</edam_operation>
+      </edam_operations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">ncbi-amrfinderplus</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1038/s41598-021-91456-0</citation>
+        </citations>
+    </xml>
+
+    <xml name="nucl_input" token_option="">
+        <param name="nucleotide_input" type="data" optional="@OPTION@" format="fasta" label="Input nucleotide sequence file" help="Select the nucleotide sequence file to be analyzed"/>
+    </xml>
+    <xml name="prot_input" token_option="">
+        <param name="protein_input" type="data" optional="@OPTION@" format="fasta" label="Input protein sequence file" help="Select the protein sequence file to be analyzed"/>
+    </xml>
+    <xml name="annotation_type" token_option="">
+        <param name="gff_annotation" type="data" format="gff3" optional="@OPTION@" multiple="false" label="GFF file for protein locations" help="Protein id should be in the attribute Name=id (9th field) of the rows with type CDS or gene (3rd field)"/>
+        <param argument="--annotation_format" type="select" optional="@OPTION@" label="Annotation file format" help="Select the annotation format type (eg. bakta or prokka tool, genbank format (default: genbank)">
+            <option value="bakta">Bakta</option>
+            <option value="genbank">Genbank</option>
+            <option value="microscope">Microscope</option>
+            <option value="patric">Patric</option>
+            <option value="prokka">Prokka</option>
+            <option value="pseudomonasdb">Pseudomonasdb</option>
+            <option value="rast">Rast</option>
+            <option value="standard">Standard</option>
+        </param>
+    </xml>
+</macros>