diff test-data/AalborgWWTPs-taxonomy.list @ 0:797603efc62d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 9ed0c3078be166bd22136771f517ae91a5198ecf
author iuc
date Fri, 16 Aug 2024 08:50:10 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/AalborgWWTPs-taxonomy.list	Fri Aug 16 08:50:10 2024 +0000
@@ -0,0 +1,495 @@
+k__Bacteria	Kingdom
+p__Firmicutes	Phylum
+p__Bacteroidetes	Phylum
+p__Proteobacteria	Phylum
+p__Actinobacteria	Phylum
+p__Hydrogenedentes	Phylum
+p__Parcubacteria	Phylum
+p__Planctomycetes	Phylum
+p__Acidobacteria	Phylum
+p__Chloroflexi	Phylum
+	Phylum
+p__Saccharibacteria	Phylum
+p__Candidate division SR1	Phylum
+p__Cyanobacteria	Phylum
+p__Synergistetes	Phylum
+p__Deinococcus-Thermus	Phylum
+p__Chlorobi	Phylum
+p__Verrucomicrobia	Phylum
+p__GOUTA4	Phylum
+p__Nitrospirae	Phylum
+p__WCHB1-60	Phylum
+p__Elusimicrobia	Phylum
+p__SM2F11	Phylum
+p__TM6	Phylum
+p__Armatimonadetes	Phylum
+p__Fusobacteria	Phylum
+p__Tenericutes	Phylum
+p__Lentisphaerae	Phylum
+p__Microgenomates	Phylum
+c__Clostridia	Class
+c__Cytophagia	Class
+c__Betaproteobacteria	Class
+c__Actinobacteria	Class
+c__Gammaproteobacteria	Class
+c__Deltaproteobacteria	Class
+c__Bacilli	Class
+c__	Class
+c__Sphingobacteriia	Class
+c__Planctomycetacia	Class
+c__Holophagae	Class
+c__Chloroflexia	Class
+c__Caldilineae	Class
+	Class
+c__Anaerolineae	Class
+c__Flavobacteriia	Class
+c__Negativicutes	Class
+c__Alphaproteobacteria	Class
+c__Unknown Class	Class
+c__Cyanobacteria	Class
+c__Synergistia	Class
+c__Thermoleophilia	Class
+c__Acidimicrobiia	Class
+c__Bacteroidia	Class
+c__Phycisphaerae	Class
+c__WCHB1-50	Class
+c__Deinococci	Class
+c__Ignavibacteria	Class
+c__Verrucomicrobiae	Class
+c__Coriobacteriia	Class
+c__TA18	Class
+c__Acidobacteria	Class
+c__Nitrospira	Class
+c__Chlorobia	Class
+c__Elusimicrobia	Class
+c__Erysipelotrichia	Class
+c__BSV13	Class
+c__Thermomicrobia	Class
+c__OPB35 soil group	Class
+c__Fusobacteriia	Class
+c__Mollicutes	Class
+c__PBS-III-20	Class
+c__Chloroplast	Class
+o__Clostridiales	Order
+o__Cytophagales	Order
+o__Nitrosomonadales	Order
+o__Micrococcales	Order
+o__Xanthomonadales	Order
+o__Desulfobacterales	Order
+o__Bacillales	Order
+o__	Order
+o__Sphingobacteriales	Order
+o__Planctomycetales	Order
+o__Holophagales	Order
+o__Propionibacteriales	Order
+o__Chloroflexales	Order
+o__PeM15	Order
+o__Caldilineales	Order
+o__Rhodocyclales	Order
+	Order
+o__Myxococcales	Order
+o__Lactobacillales	Order
+o__Anaerolineales	Order
+o__Flavobacteriales	Order
+o__Selenomonadales	Order
+o__Rhodospirillales	Order
+o__Unknown Order	Order
+o__SubsectionIII	Order
+o__Burkholderiales	Order
+o__Rickettsiales	Order
+o__Rhizobiales	Order
+o__Synergistales	Order
+o__Gaiellales	Order
+o__Acidimicrobiales	Order
+o__Bacteroidales	Order
+o__Phycisphaerales	Order
+o__WCHB1-50	Order
+o__Thermales	Order
+o__Ignavibacteriales	Order
+o__Bdellovibrionales	Order
+o__Verrucomicrobiales	Order
+o__Coriobacteriales	Order
+o__Subgroup 6	Order
+o__Nitrospirales	Order
+o__WD2101 soil group	Order
+o__Actinomycetales	Order
+o__Chlorobiales	Order
+o__Subgroup 10	Order
+o__Lineage IIb	Order
+o__Oligoflexales	Order
+o__Solirubrobacterales	Order
+o__Erysipelotrichales	Order
+o__Corynebacteriales	Order
+o__JG30-KF-CM45	Order
+o__FW73	Order
+o__Fusobacteriales	Order
+o__Mollicutes RF9	Order
+o__Neisseriales	Order
+o__GR-WP33-30	Order
+f__Lachnospiraceae	Family
+f__Ruminococcaceae	Family
+f__Cytophagaceae	Family
+f__Nitrosomonadaceae	Family
+f__Intrasporangiaceae	Family
+f__Xanthomonadaceae	Family
+f__Desulfobacteraceae	Family
+f__Planococcaceae	Family
+f__	Family
+f__Dermatophilaceae	Family
+f__AKYH767	Family
+f__Planctomycetaceae	Family
+f__Holophagaceae	Family
+f__Propionibacteriaceae	Family
+f__Roseiflexaceae	Family
+f__PeM15	Family
+f__Caldilineaceae	Family
+f__Rhodocyclaceae	Family
+	Family
+f__Blfdi19	Family
+f__Lactobacillaceae	Family
+f__Anaerolineaceae	Family
+f__Flavobacteriaceae	Family
+f__Veillonellaceae	Family
+f__Acetobacteraceae	Family
+f__mle1-27	Family
+f__SBR2060	Family
+f__FamilyI	Family
+f__Microbacteriaceae	Family
+f__Saprospiraceae	Family
+f__Comamonadaceae	Family
+f__TK34	Family
+f__Bradyrhizobiaceae	Family
+f__Synergistaceae	Family
+f__Desulfobulbaceae	Family
+f__BVA77	Family
+f__env.OPS 17	Family
+f__Nocardioidaceae	Family
+f__DUNssu044	Family
+f__Prevotellaceae	Family
+f__Family XII	Family
+f__Phycisphaeraceae	Family
+f__Chitinophagaceae	Family
+f__WCHB1-50	Family
+f__Hyphomicrobiaceae	Family
+f__Thermaceae	Family
+f__Carnobacteriaceae	Family
+f__PHOS-HE36	Family
+f__Family XIII	Family
+f__Sandaracinaceae	Family
+f__Bdellovibrionaceae	Family
+f__Mitochondria	Family
+f__Verrucomicrobiaceae	Family
+f__Coriobacteriaceae	Family
+f__Nordellaceae	Family
+f__Clostridiaceae 1	Family
+f__Peptostreptococcaceae	Family
+f__Holosporaceae	Family
+f__Nitrospiraceae	Family
+f__Porphyromonadaceae	Family
+f__Actinomycetaceae	Family
+f__Family XI	Family
+f__Chlorobiaceae	Family
+f__NS9 marine group	Family
+f__Rhodospirillales Incertae Sedis	Family
+f__ABS-19	Family
+f__Haliangiaceae	Family
+f__Bacillaceae	Family
+f__480-2	Family
+f__Erysipelotrichaceae	Family
+f__Acidimicrobiaceae	Family
+f__Bacteroidaceae	Family
+f__Nocardiaceae	Family
+f__bacteriap25	Family
+f__Christensenellaceae	Family
+f__Rhodospirillaceae	Family
+f__Beutenbergiaceae	Family
+f__Leptotrichiaceae	Family
+f__Oligoflexaceae	Family
+f__Neisseriaceae	Family
+f__AKIW1012	Family
+f__Microthricaceae	Family
+f__OPB56	Family
+g__Acetitomaculum	Genus
+g__Ruminococcaceae UCG-005	Genus
+g__Dyadobacter	Genus
+g__Nitrosomonas	Genus
+g__Tetrasphaera	Genus
+	Genus
+g__Desulforegula	Genus
+g__Rummeliibacillus	Genus
+g__	Genus
+g__Fusicatenibacter	Genus
+g__Ruminiclostridium 1	Genus
+g__uncultured	Genus
+g__Brooklawnia	Genus
+g__Sulfuritalea	Genus
+g__Lactobacillus	Genus
+g__Flavobacterium	Genus
+g__Acidicaldus	Genus
+g__Candidatus Defluviifilum	Genus
+g__Ruminococcaceae UCG-010	Genus
+g__SBR2113	Genus
+g__Subdoligranulum	Genus
+g__Ramlibacter	Genus
+g__Bosea	Genus
+g__Desulfobulbus	Genus
+g__Nocardioides	Genus
+g__Fusibacter	Genus
+g__SM1F10	Genus
+g__Hyphomicrobium	Genus
+g__Meiothermus	Genus
+g__Trichococcus	Genus
+g__oca15	Genus
+g__Simplicispira	Genus
+g__Sandaracinus	Genus
+g__OM27 clade	Genus
+g__Collinsella	Genus
+g__MNG7	Genus
+g__Roseomonas	Genus
+g__Pirellula	Genus
+g__Clostridium sensu stricto 1	Genus
+g__Acetoanaerobium	Genus
+g__Nitrospira	Genus
+g__Propioniciclava	Genus
+g__Parabacteroides	Genus
+g__Actinomyces	Genus
+g__Aeromicrobium	Genus
+g__Clostridium sensu stricto 6	Genus
+g__Reyranella	Genus
+g__Proteiniclasticum	Genus
+g__B1-K1A-105	Genus
+g__Prevotellaceae UCG-004	Genus
+g__Haliangium	Genus
+g__Ureibacillus	Genus
+g__Ruminococcus 2	Genus
+g__CYCU-0281	Genus
+g__Parafilimonas	Genus
+g__Aestuariimicrobium	Genus
+g__Diaminobutyricimonas	Genus
+g__K2-78	Genus
+g__Erysipelatoclostridium	Genus
+g__CL500-29 marine group	Genus
+g__Bacteroides	Genus
+g__Tessaracoccus	Genus
+g__Gordonia	Genus
+g__Senegalimassilia	Genus
+g__Atopobium	Genus
+g__Proteiniphilum	Genus
+g__Uliginosibacterium	Genus
+g__WCHB1-50	Genus
+g__Christensenellaceae R-7 group	Genus
+g__Fodinibacter	Genus
+g__Defluviicoccus	Genus
+g__Acidovorax	Genus
+g__Salana	Genus
+g__Propionimicrobium	Genus
+g__Litorilinea	Genus
+g__Faecalitalea	Genus
+g__Ruminiclostridium 5	Genus
+g__Rivicola	Genus
+g__[Eubacterium] coprostanoligenes group	Genus
+g__Lewinella	Genus
+s__	Species
+	Species
+s__sublineage I	Species
+s__cluster I	Species
+OTU_8735	OTU
+OTU_13382	OTU
+OTU_5516	OTU
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