Mercurial > repos > iuc > adapter_removal

comparison macros.xml @ 0:e42205a5495e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/adapter_removal/ commit 138d7e0d844a783f1e8100d264d57540199f290f"
author iuc
date Wed, 04 May 2022 13:45:22 +0000
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children 0a355925c1bf
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-1:000000000000 0:e42205a5495e
1 <macros>
2 <token name="@TOOL_VERSION@">2.3.3</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">20.09</token>
5 <token name="@DATATYPES@">fastqsanger.gz,fastqsanger</token>
6 <xml name="bio_tools">
7 <xrefs>
8 <xref type="bio.tools">adapterremoval</xref>
9 </xrefs>
10 </xml>
11 <xml name="requirements">
12 <requirements>
13 <requirement type="package" version="@TOOL_VERSION@">adapterremoval</requirement>
14 </requirements>
15 </xml>
16 <xml name="interleaved_output_param">
17 <param argument="--interleaved_output" type="select" label="Write paired-end reads to a single file, interleaving mate 1 and mate 2 reads?">
18 <option value="no" selected="true">No</option>
19 <option value="yes">Yes</option>
20 </param>
21 </xml>
22 <xml name="identify_adapters_param">
23 <param argument="--identify_adapters" type="boolean" truevalue="--identify-adapters" falsevalue="" checked="false" label="Attempt to build a consensus adapter sequence from fully overlapping pairs of paired-end reads?" help="No trimming is performed in this mode"/>
24 </xml>
25 <xml name="combined_output_param">
26 <param argument="--combined_output" type="boolean" truevalue="--combined-output" falsevalue="" checked="false" label="Output trimmed reads such that the sequences of reads discarded due to quality filters or read merging are replaced with a single 'N' with Phred score 0?"/>
27 </xml>
28 <xml name="sanitizer">
29 <sanitizer>
30 <valid initial="string.printable">
31 <remove value="&apos;" />
32 </valid>
33 <mapping initial="none">
34 <add source="&apos;" target="__sq__"/>
35 </mapping>
36 </sanitizer>
37 </xml>
38 <xml name="citations">
39 <citations>
40 <citation type="doi">10.1186/s13104-016-1900-2</citation>
41 </citations>
42 </xml>
43 </macros>
44