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comparison abyss-pe.xml @ 21:024f0ca29900 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abyss commit ff35237f0cebb11f1da08a9a331185c9911eff93
author iuc
date Tue, 19 Nov 2024 12:41:57 +0000
parents dd49135a0c3b
children
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20:dd49135a0c3b 21:024f0ca29900
1 <tool id="abyss-pe" name="ABySS" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="abyss-pe" name="ABySS" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.02" license="GPL-3.0">
2 <description>de novo sequence assembler</description> 2 <description>de novo sequence assembler</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">2.3.9</token> 4 <token name="@TOOL_VERSION@">2.3.10</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">0</token>
6 <xml name="reads_conditional"> 6 <xml name="reads_conditional">
7 <conditional name="reads"> 7 <conditional name="reads">
8 <param name="reads_selector" type="select" label="Type of paired-end datasets"> 8 <param name="reads_selector" type="select" label="Type of paired-end datasets">
9 <option value="paired">2 separate datasets</option> 9 <option value="paired">2 separate datasets</option>
279 279
280 This tool performs the complete ABySS pipeline using abyss-pe, described in https://github.com/bcgsc/abyss/blob/master/doc/flowchart.pdf . 280 This tool performs the complete ABySS pipeline using abyss-pe, described in https://github.com/bcgsc/abyss/blob/master/doc/flowchart.pdf .
281 281
282 **License and citation** 282 **License and citation**
283 283
284 This Galaxy tool is Copyright © 2015-2021 `Earlham Institute`_ and is released under the `MIT license`_. 284 This Galaxy tool is Copyright © 2015-2021 `Earlham Institute`_
285 285
286 .. _Earlham Institute: http://www.earlham.ac.uk/ 286 .. _Earlham Institute: http://www.earlham.ac.uk/
287 .. _MIT license: https://opensource.org/licenses/MIT
288
289 You can use this tool only if you agree to the license terms of: `ABySS`_.
290 287
291 .. _ABySS: https://github.com/bcgsc/abyss 288 .. _ABySS: https://github.com/bcgsc/abyss
292 ]]></help> 289 ]]></help>
293 <citations> 290 <citations>
294 <citation type="doi">doi:10.1101/gr.214346.116</citation> 291 <citation type="doi">doi:10.1101/gr.214346.116</citation>