Mercurial > repos > iuc > abricate

annotate abricate_list.xml @ 10:ec595bb4bb4f draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 6285862fce2b3e298ef0333489392335091b5b0d"
author iuc
date Thu, 15 Apr 2021 18:21:06 +0000
parents 707050fe53e1
children
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ec595bb4bb4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 6285862fce2b3e298ef0333489392335091b5b0d"
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1 <tool id="abricate_list" name="ABRicate List" version="@VERSION@" profile="@PROFILE@">
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2 <description>
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3 List all of abricate's available databases.
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4 </description>
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro='xrefs'/>
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9 <expand macro='edam_ontology'/>
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10 <expand macro="requirements" />
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11 <expand macro="version_command" />
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12
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13 <command detect_errors="exit_code"><![CDATA[
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14 abricate --list > '$report'
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15 ]]></command>
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16
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17 <inputs>
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18 </inputs>
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19
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20 <outputs>
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21 <data name="report" format="txt" label="${tool.name} - list of databases"/>
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22 </outputs>
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23
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24 <tests>
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25 <test>
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26 <output name="report" ftype="txt" file="output_list.txt" compare="contains" />
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27 </test>
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28 </tests>
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29
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30 <help><![CDATA[
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31 **What it does**
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32
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33 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
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34 ]]></help>
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35
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36 <expand macro="citations"/>
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37 </tool>