--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tandem_to_pepxml.xml	Mon Jan 05 00:56:19 2015 -0500
@@ -0,0 +1,26 @@
+<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.2">
+	<requirements>
+            <container type="docker">simonalpha/protk:1.4.0</container>
+	    <requirement type="package" version="1.4">protk</requirement>
+	    <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
+   </requirements>
+
+  <description>Converts a tandem result file to pepXML</description>
+
+<command>
+	tandem_to_pepxml.rb $input_file -o $output 
+</command>
+
+<inputs>
+	<param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
+</inputs>
+
+<outputs>
+	<data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
+</outputs>
+
+<help>
+	Convert X!Tandem results to pepXML
+</help>
+
+</tool>