Mercurial > repos > iracooke > tpp_prophets

changeset 3:ffe1e8b1d6c3 draft

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Uploaded
author iracooke
date Tue, 11 Mar 2014 20:50:51 -0400
parents 5674c9c2e0d0
children 89a300fbb159
files interprophet.xml
diffstat 1 files changed, 4 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/interprophet.xml	Sun Jun 09 08:32:54 2013 -0500
+++ b/interprophet.xml	Tue Mar 11 20:50:51 2014 -0400
@@ -1,18 +1,16 @@
 <tool id="proteomics_search_interprophet_1" name="InterProphet" version="1.0.1">
 	
 	<requirements>
-	    <requirement type="package" version="1.2.2">galaxy_protk</requirement>
-	    <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement>
+	    <requirement type="package" version="1.2.6">protk</requirement>
+	    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
    </requirements>
 
 
   <description>Combine Peptide Prophet results from multiple search engines</description>
 
-  <command interpreter="bash">
+  <command>interprophet.rb --galaxy
 
-	interprophet_wrapper.sh 
-
-	$output 
+	-o interprophet_output.pep.xml
 
 	$use_nss