Mercurial > repos > iracooke > protk_proteogenomics

comparison test-data/small_combined.gff @ 0:956bfab63005 draft default tip

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planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
author iracooke
date Tue, 20 Oct 2015 20:36:03 -0400
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-1:000000000000 0:956bfab63005
1 ##gff-version 3
2 scaffold10 sixframe CDS 513537 514187 . + 0 ID=scaffold10_frame_3_orf_6477
3 scaffold10 sixframe CDS 346373 347986 . - 0 ID=scaffold10_frame_6_orf_3129
4 # start gene g447
5 scaffold10 AUGUSTUS gene 195564 196835 0.75 + . ID=g447
6 scaffold10 AUGUSTUS transcript 195564 196835 0.75 + . ID=g447.t1;Parent=g447
7 scaffold10 AUGUSTUS start_codon 195564 195566 . + 0 Parent=g447.t1
8 scaffold10 AUGUSTUS intron 195714 195776 0.93 + . Parent=g447.t1
9 scaffold10 AUGUSTUS CDS 195564 195713 0.82 + 0 ID=g447.t1.cds;Parent=g447.t1
10 scaffold10 AUGUSTUS CDS 195777 196835 0.92 + 0 ID=g447.t1.cds;Parent=g447.t1
11 scaffold10 AUGUSTUS stop_codon 196833 196835 . + 0 Parent=g447.t1
12 # coding sequence = [atggcggacaatagagattacgcgccagatactctggccgttcacgccgacgatgcgatgaactcatatacagatgtcg
13 # cgcctgctttacacgtttctacaacctaccggtatgataattcaagactggtcccgatttcagatgaagagctagatcccctcaccgccctccctgta
14 # tactcccgcctctcggccccaaacatctcgcgcctcgaacttatactgagctccctgacgaacggacaggcactgacttattcgtctggtttaagtgc
15 # atttcatgccatgcttgtgtttttacgaccgaaagttatcgctatcagcgacggctaccacggatgtcatggtgttattgctatactggaaaaattat
16 # acggattgaagaaggtcaacctctgggatgagaaggaatgggatactttcggtttcggcgaaggcgatgtggtacacgtcgaaactcctctcaatcct
17 # accggcgaagccatcaatcttgaggttttcagggagaaagctaggaaaaggggcgcgtatctgacagttgattcgacgtttgggccgccggggttgca
18 # ggatccgttcgtgcaaggggcagatgtggttatgcattctgggaccaagtattttggaggacatagtgatatgctttgtggtgtcttggttgttcgga
19 # aagaaaagaaagaatggattagggggttgtggaatgagaggatgtatttagggagtgtaatggggaatatggagagttggcttggtgtgaggagtttg
20 # aggacattggagttgagggtggcgaggcagagtaagaatgctgagagtattgtgaagtggcttgacgcttccttgcggggggagggggatgatgccgt
21 # cgttgtacagaagacggttttgaagattcagcatgcgagtttgcagaaggatgatatggattggattaagacgcaaatgccgggtgggtttggaccgg
22 # tgtttgtgatatggatgaagtcgatgcagttagcaagggctcttcccgggaagctgaagctatttcatcatgctacgagtcttggaggcgtggaaagt
23 # ctgattgaatggaggaaaatgagcgatagcggtgtagatgtcagagtgttgagagtcagcataggtgtagagcactgggaagacctgagggccgactt
24 # cttggaagggttcaaggctttggctctgtcggacgaagtaaatggagcataa]
25 # protein sequence = [MADNRDYAPDTLAVHADDAMNSYTDVAPALHVSTTYRYDNSRLVPISDEELDPLTALPVYSRLSAPNISRLELILSSL
26 # TNGQALTYSSGLSAFHAMLVFLRPKVIAISDGYHGCHGVIAILEKLYGLKKVNLWDEKEWDTFGFGEGDVVHVETPLNPTGEAINLEVFREKARKRGA
27 # YLTVDSTFGPPGLQDPFVQGADVVMHSGTKYFGGHSDMLCGVLVVRKEKKEWIRGLWNERMYLGSVMGNMESWLGVRSLRTLELRVARQSKNAESIVK
28 # WLDASLRGEGDDAVVVQKTVLKIQHASLQKDDMDWIKTQMPGGFGPVFVIWMKSMQLARALPGKLKLFHHATSLGGVESLIEWRKMSDSGVDVRVLRV
29 # SIGVEHWEDLRADFLEGFKALALSDEVNGA]
30 # end gene g447
31 ###