Mercurial > repos > iracooke > proteindb_from_gff3

changeset 1:c2e169ff9e63 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iracooke
date Tue, 18 Mar 2014 20:33:59 -0400
parents af52f95e857e
children
files proteindb_from_gff3.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/proteindb_from_gff3.xml	Tue Mar 18 20:29:57 2014 -0400
+++ b/proteindb_from_gff3.xml	Tue Mar 18 20:33:59 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="proteindb_from_gff3" name="Extract proteins from gff3" version="1.0.0">
+<tool id="proteindb_from_gff3" name="Extract proteins from gff3" version="1.0.1">
 	<requirements>
 	    <requirement type="package" version="1.2.6">protk</requirement>
    </requirements>
@@ -6,7 +6,7 @@
 	<description>Extract proteins from gff3 and encode genomic coordinates in the fasta header</description>
 
 	<command>
-		augustus_to_proteindb.rb $fasta_file -o $output $coords
+		augustus_to_proteindb.rb $gff_file -o $output $coords
 	</command>
 
 
@@ -17,7 +17,7 @@
 	</stdio>
 
 	<inputs>	
-		<param name="fasta_file" type="data" format="fasta" label="Uploaded FASTA file" />
+		<param name="gff_file" type="data" format="gff3" label="Augustus Generated gff3 File" />
 		<param name="coords" type="boolean" label="Write genomic coordinates" help="" truevalue="--info" falsevalue="" />
 	</inputs>