Mercurial > repos > iracooke > package_proteowizard_3_0_4388

comparison tool_dependencies.xml @ 7:d21f91402d1c draft default tip

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author iracooke
date Tue, 11 Mar 2014 01:29:21 -0400
parents b2d5b8844b5c
children
comparison
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6:b2d5b8844b5c 7:d21f91402d1c
5 <actions> 5 <actions>
6 <action type="download_binary"> 6 <action type="download_binary">
7 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/chainsaw</url_template> 7 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/chainsaw</url_template>
8 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/chainsaw</url_template> 8 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/chainsaw</url_template>
9 </action> 9 </action>
10
10 <action type="download_binary"> 11 <action type="download_binary">
11 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/idcat</url_template> 12 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/idcat</url_template>
12 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/idcat</url_template> 13 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/idcat</url_template>
13 </action> 14 </action>
14 <action type="download_binary"> 15 <action type="download_binary">
15 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/idconvert</url_template> 16 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/idconvert</url_template>
16 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/idconvert</url_template> 17 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/idconvert</url_template>
17 </action>
18 <action type="shell_command">
19 chmod u+x $INSTALL_DIR/idconvert; echo $INSTALL_DIR
20 </action> 18 </action>
21 <action type="download_binary"> 19 <action type="download_binary">
22 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/license</url_template> 20 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/license</url_template>
23 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/license</url_template> 21 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/license</url_template>
24 </action> 22 </action>
75 <action type="download_binary"> 73 <action type="download_binary">
76 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/unimod_2.xsd</url_template> 74 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/unimod_2.xsd</url_template>
77 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/unimod_2.xsd</url_template> 75 <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/unimod_2.xsd</url_template>
78 </action> 76 </action>
79 77
80 <action type="shell_command"> 78 <action type="chmod">
81 chmod ug+x $INSTALL_DIR/chainsaw $INSTALL_DIR/idcat $INSTALL_DIR/idconvert $INSTALL_DIR/msaccess $INSTALL_DIR/msbenchmark $INSTALL_DIR/mscat $INSTALL_DIR/msconvert $INSTALL_DIR/msdiff $INSTALL_DIR/msdir $INSTALL_DIR/msistats $INSTALL_DIR/mspicture $INSTALL_DIR/peakaboo $INSTALL_DIR/pepcat $INSTALL_DIR/pepsum $INSTALL_DIR/sldout $INSTALL_DIR/txt2mzml 79 <file mode="750">$INSTALL_DIR/chainsaw</file>
80 <file mode="750">$INSTALL_DIR/idcat</file>
81 <file mode="750">$INSTALL_DIR/idconvert</file>
82 <file mode="750">$INSTALL_DIR/msaccess</file>
83 <file mode="750">$INSTALL_DIR/msbenchmark</file>
84 <file mode="750">$INSTALL_DIR/mscat</file>
85 <file mode="750">$INSTALL_DIR/msconvert</file>
86 <file mode="750">$INSTALL_DIR/msdiff</file>
87 <file mode="750">$INSTALL_DIR/msdir</file>
88 <file mode="750">$INSTALL_DIR/msistats</file>
89 <file mode="750">$INSTALL_DIR/mspicture</file>
90 <file mode="750">$INSTALL_DIR/peakaboo</file>
91 <file mode="750">$INSTALL_DIR/pepcat</file>
92 <file mode="750">$INSTALL_DIR/pepsum</file>
93 <file mode="750">$INSTALL_DIR/sldout</file>
94 <file mode="750">$INSTALL_DIR/txt2mzml</file>
82 </action> 95 </action>
83 96
84 <action type="set_environment"> 97 <action type="set_environment">
85 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 98 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
86 <environment_variable action="set_to" name="PROTK_PWIZ_ROOT">$INSTALL_DIR</environment_variable> 99 <environment_variable action="set_to" name="PROTK_PWIZ_ROOT">$INSTALL_DIR</environment_variable>