# HG changeset patch
# User iracooke
# Date 1393893113 18000
# Node ID d3994c3ec4874f9d09548b49a320a04a4ca31b87
# Parent  a849525409693a2655e5155747c26d895c09c544
Uploaded

diff -r a84952540969 -r d3994c3ec487 msgfplus_search.xml
--- a/msgfplus_search.xml	Mon Mar 03 19:05:35 2014 -0500
+++ b/msgfplus_search.xml	Mon Mar 03 19:31:53 2014 -0500
@@ -26,6 +26,7 @@
         ,${custom_fix_mod.custom_mod}
         #end for
         '
+
         $input_file 
         -o $output 
         -r 
@@ -44,7 +45,7 @@
         --min-pep-charge=$min_pep_charge
         --num-reported-matches=$num_reported_matches
         --java-mem=$java_mem
-        #if $pepxml_output_use
+        #if $pepxml_output_use:
         #else
         --no-pepxml
         #end if