Mercurial > repos > iracooke > msconvert
comparison README_REPO.md @ 0:d44fecaf27a2 draft
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| author | iracooke |
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| date | Tue, 18 Mar 2014 19:08:54 -0400 |
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| -1:000000000000 | 0:d44fecaf27a2 |
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| 1 # msconvert | |
| 2 | |
| 3 This repository contains Galaxy tool wrappers for msconvert, part of | |
| 4 the ProteoWizard (http://proteowizard.sourceforge.net/) package. | |
| 5 | |
| 6 # Installing | |
| 7 | |
| 8 Due to potential difficulties installing ProteoWizard with vendor | |
| 9 library support, tools for interacting with vendor types are seperated | |
| 10 out into their own wrappers. Galaxy is generally deployed under Linux, | |
| 11 but vendor support in ProteoWizard requires .NET 4.0. There are at | |
| 12 least two ways to get this to work: | |
| 13 | |
| 14 * Galaxy jobs may be configured to submit to a Windows host with | |
| 15 ProteoWizard installed using the | |
| 16 LWR. http://wiki.g2.bx.psu.edu/Admin/Config/LWR | |
| 17 | |
| 18 * ProteoWizard can be installed under Wine. Guidance on how to set | |
| 19 this up and package such environments for cloud deployments can be | |
| 20 found here: https://github.com/jmchilton/proteomics-wine-env | |
| 21 | |
| 22 Wrappers for both msconvert version 2 and version 3+ are provided | |
| 23 because version 3+ of msconvert with vendor library support requires | |
| 24 .NET 4.0 and this may difficult or impossible under Wine in Linux with | |
| 25 all but the most recent versions of Wine (1.4+). |