# HG changeset patch # User iracooke # Date 1402696947 14400 # Node ID 1de17a5e805894654ea0c5ec2e5f0d12bbf9cab3 # Parent 45dee11aa2bfe9542b938bf8f0bd967d275c12d1 Uploaded diff -r 45dee11aa2bf -r 1de17a5e8058 README --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Fri Jun 13 18:02:27 2014 -0400 @@ -0,0 +1,4 @@ +Requirements: +This package uses protk which must be installed separately. + +For instructions please see: https://github.com/iracooke/protk/#galaxy-integration \ No newline at end of file diff -r 45dee11aa2bf -r 1de17a5e8058 README.md --- a/README.md Tue Mar 18 20:50:51 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -# Make decoys from a protein database - - diff -r 45dee11aa2bf -r 1de17a5e8058 make_decoy.xml --- a/make_decoy.xml Tue Mar 18 20:50:51 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,46 +0,0 @@ - - - protk - - - Generate random protein sequences with the same AA composition and input sequences - - - make_decoy.rb $fasta_file -o $output - -P $prefix_string - $append - - - - - - - - - - - - - - - - - - - - - - - -**What it does** - -Generates random protein sequences based on a given set of input sequences. To be used for decoy proteomics searches - ----- - -**References** - - - - - diff -r 45dee11aa2bf -r 1de17a5e8058 repository_dependencies.xml --- a/repository_dependencies.xml Tue Mar 18 20:50:51 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ - - - - diff -r 45dee11aa2bf -r 1de17a5e8058 tool_dependencies.xml --- a/tool_dependencies.xml Tue Mar 18 20:50:51 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ - - - - - -